Medical Genetics, Genomics and Bioinformatics-2022

Overview

Journal Int J Mol Sci

Publisher MDPI

Specialties Biochemistry
Chemistry
Molecular Biology

Date 2023 May 27

PMID 37240312

Authors

Vadim V Klimontov

Konstantin A Koshechkin

Nina G Orlova

Marina I Sekacheva

Yuriy L Orlov

Affiliations

Soon will be listed here.

Abstract

The analysis of molecular mechanisms of disease progression challenges the development of bioinformatics tools and omics data integration [...].

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References

Ivanisenko V, Saik O, Ivanisenko N, Tiys E, Ivanisenko T, Demenkov P . ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology. BMC Syst Biol. 2015; 9 Suppl 2:S2. PMC: 4407185. DOI: 10.1186/1752-0509-9-S2-S2. View

Iancu I, Perea-Romero I, Nunez-Moreno G, de la Fuente L, Romero R, Avila-Fernandez A . Aggregated Genomic Data as Cohort-Specific Allelic Frequencies can Boost Variants and Genes Prioritization in Non-Solved Cases of Inherited Retinal Dystrophies. Int J Mol Sci. 2022; 23(15). PMC: 9368980. DOI: 10.3390/ijms23158431. View

Danilchenko V, Zytsar M, Maslova E, Posukh O . Selection of Diagnostically Significant Regions of the Gene Involved in Hearing Loss. Int J Mol Sci. 2022; 23(21). PMC: 9655724. DOI: 10.3390/ijms232113453. View

Gerasimov A, Lebedev G, Lebedev M, Semenycheva I . COVID-19 Dynamics: A Heterogeneous Model. Front Public Health. 2021; 8:558368. PMC: 7874228. DOI: 10.3389/fpubh.2020.558368. View

Orlov Y, Baranova A, Hofestadt R, Kolchanov N . Computational genomics at BGRS\SB-2016: introductory note. BMC Genomics. 2017; 17(Suppl 14):996. PMC: 5249040. DOI: 10.1186/s12864-016-3350-6. View

Pudova E, Kobelyatskaya A, Katunina I, Snezhkina A, Nyushko K, Fedorova M . Docetaxel Resistance in Castration-Resistant Prostate Cancer: Transcriptomic Determinants and the Effect of Inhibiting Wnt/β-Catenin Signaling by XAV939. Int J Mol Sci. 2022; 23(21). PMC: 9658696. DOI: 10.3390/ijms232112837. View

Ivanisenko T, Demenkov P, Kolchanov N, Ivanisenko V . The New Version of the ANDDigest Tool with Improved AI-Based Short Names Recognition. Int J Mol Sci. 2022; 23(23). PMC: 9738852. DOI: 10.3390/ijms232314934. View

Melamud M, Ermakov E, Boiko A, Kamaeva D, Sizikov A, Ivanova S . Multiplex Analysis of Serum Cytokine Profiles in Systemic Lupus Erythematosus and Multiple Sclerosis. Int J Mol Sci. 2022; 23(22). PMC: 9695219. DOI: 10.3390/ijms232213829. View

Sanchez-Navarro I, R J da Silva L, Blanco-Kelly F, Zurita O, Sanchez-Bolivar N, Villaverde C . Combining targeted panel-based resequencing and copy-number variation analysis for the diagnosis of inherited syndromic retinopathies and associated ciliopathies. Sci Rep. 2018; 8(1):5285. PMC: 5869593. DOI: 10.1038/s41598-018-23520-1. View

10.

Anashkina A, Leberfarb E, Orlov Y . Recent Trends in Cancer Genomics and Bioinformatics Tools Development. Int J Mol Sci. 2021; 22(22). PMC: 8618360. DOI: 10.3390/ijms222212146. View

11.

Trink Y, Urbach A, Dekel B, Hohenstein P, Goldberger J, Kalisky T . Characterization of Continuous Transcriptional Heterogeneity in High-Risk Blastemal-Type Wilms' Tumors Using Unsupervised Machine Learning. Int J Mol Sci. 2023; 24(4). PMC: 9965420. DOI: 10.3390/ijms24043532. View

12.

Krasnova O, Gursky V, Chabina A, Kulakova K, Alekseenko L, Panova A . Prognostic Analysis of Human Pluripotent Stem Cells Based on Their Morphological Portrait and Expression of Pluripotent Markers. Int J Mol Sci. 2022; 23(21). PMC: 9656397. DOI: 10.3390/ijms232112902. View

13.

Saik O, Klimontov V . Gene Networks of Hyperglycemia, Diabetic Complications, and Human Proteins Targeted by SARS-CoV-2: What Is the Molecular Basis for Comorbidity?. Int J Mol Sci. 2022; 23(13). PMC: 9266766. DOI: 10.3390/ijms23137247. View

14.

Lebedev G, Fartushnyi E, Fartushnyi I, Shaderkin I, Klimenko H, Kozhin P . Technology of Supporting Medical Decision-Making Using Evidence-Based Medicine and Artificial Intelligence. Procedia Comput Sci. 2020; 176:1703-1712. PMC: 7531984. DOI: 10.1016/j.procs.2020.09.195. View

15.

Gim J . A Genomic Information Management System for Maintaining Healthy Genomic States and Application of Genomic Big Data in Clinical Research. Int J Mol Sci. 2022; 23(11). PMC: 9180925. DOI: 10.3390/ijms23115963. View

16.

Shevtsov A, Raevskiy M, Stupnikov A, Medvedeva Y . In Silico Drug Repurposing in Multiple Sclerosis Using scRNA-Seq Data. Int J Mol Sci. 2023; 24(2). PMC: 9864606. DOI: 10.3390/ijms24020985. View

17.

Bai H, Liu H, Suyalatu S, Guo X, Chu S, Chen Y . Association Analysis of Genetic Variants with Type 2 Diabetes in a Mongolian Population in China. J Diabetes Res. 2015; 2015:613236. PMC: 4531200. DOI: 10.1155/2015/613236. View

18.

Voropaeva E, Pospelova T, Orlov Y, Churkina M, Berezina O, Gurazheva A . The Methylation of the p53 Targets the Genes , , and in the Tumor Tissue of Diffuse Large B-Cell Lymphoma. Genes (Basel). 2022; 13(8). PMC: 9408007. DOI: 10.3390/genes13081401. View

19.

Hohenstein P, Pritchard-Jones K, Charlton J . The yin and yang of kidney development and Wilms' tumors. Genes Dev. 2015; 29(5):467-82. PMC: 4358399. DOI: 10.1101/gad.256396.114. View

20.

Orlov Y, Anashkina A, Klimontov V, Baranova A . Medical Genetics, Genomics and Bioinformatics Aid in Understanding Molecular Mechanisms of Human Diseases. Int J Mol Sci. 2021; 22(18). PMC: 8467458. DOI: 10.3390/ijms22189962. View