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Comprehending the Structure, Dynamics, and Mechanism of Action of Drug-Resistant HIV Protease

Overview
Journal ACS Omega
Specialty Chemistry
Date 2023 Mar 27
PMID 36969469
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Abstract

Since the emergence of the Human Immunodeficiency Virus (HIV) in the 1980s, strategies to combat HIV-AIDS are continuously evolving. Among the many tested targets to tackle this virus, its protease enzyme (PR) was proven to be an attractive option that brought about numerous research publications and ten FDA-approved drugs to inhibit the PR activity. However, the drug-induced mutations in the enzyme made these small molecule inhibitors ineffective with prolonged usage. The research on HIV PR, therefore, remains a thrust area even today. Through this review, we reiterate the importance of understanding the various structural and functional components of HIV PR in redesigning the structure-based small molecule inhibitors. We also discuss at length the currently available FDA-approved drugs and how these drug molecules induced mutations in the enzyme structure. We then recapitulate the reported mechanisms on how these drug-resistant variants remain sufficiently active to cleave the natural substrates. We end with the future scope covering the recently proposed strategies that show promise to deal with the mutations.

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References
1.
Liu Z, Wang Y, Yedidi R, Dewdney T, Reiter S, Brunzelle J . Conserved hydrogen bonds and water molecules in MDR HIV-1 protease substrate complexes. Biochem Biophys Res Commun. 2012; 430(3):1022-7. PMC: 4520401. DOI: 10.1016/j.bbrc.2012.12.045. View

2.
Ishima R, Freedberg D, Wang Y, Louis J, Torchia D . Flap opening and dimer-interface flexibility in the free and inhibitor-bound HIV protease, and their implications for function. Structure. 1999; 7(9):1047-55. DOI: 10.1016/s0969-2126(99)80172-5. View

3.
Nijhuis M, van Maarseveen N, Lastere S, Schipper P, Coakley E, Glass B . A novel substrate-based HIV-1 protease inhibitor drug resistance mechanism. PLoS Med. 2007; 4(1):e36. PMC: 1769415. DOI: 10.1371/journal.pmed.0040036. View

4.
Hayashi H, Takamune N, Nirasawa T, Aoki M, Morishita Y, Das D . Dimerization of HIV-1 protease occurs through two steps relating to the mechanism of protease dimerization inhibition by darunavir. Proc Natl Acad Sci U S A. 2014; 111(33):12234-9. PMC: 4142999. DOI: 10.1073/pnas.1400027111. View

5.
Navia M, Fitzgerald P, McKeever B, Leu C, Heimbach J, Herber W . Three-dimensional structure of aspartyl protease from human immunodeficiency virus HIV-1. Nature. 1989; 337(6208):615-20. DOI: 10.1038/337615a0. View