» Articles » PMID: 36620324

The Complete Chloroplast Genome of Diels (Zingiberaceae)

Overview
Date 2023 Jan 9
PMID 36620324
Authors
Affiliations
Soon will be listed here.
Abstract

The chloroplast genome of Diels was sequenced using the MGI paired-end sequencing method and assembled. The chloroplast genome was 163,711 bp in length, containing a large single-copy (LSC) region of 88,205 bp, a small single-copy (SSC) region of 15,750 bp, and two inverted repeat (IR) regions of 29,752 bp. The overall GC content was 36.1%, whereas the corresponding value in the IR regions was 41.1%, which was higher than that in the LSC region (33.8%) and SSC region (29.6%). A total of 136 complete genes were annotated in the chloroplast genome of , including 87 protein-coding genes (79 protein-coding gene species), 40 tRNA genes (29 tRNA species), and 8 rRNA genes (4 rRNA species). A phylogenetic tree was constructed using the maximum likelihood (ML) method, and the results showed that the phylogeny of was well resolved with high support values, and was sister to . The assembly and sequence analysis of the chloroplast genome can provide a basis for developing high-resolution genetic makers.

Citing Articles

The complete chloroplast genome of Roxb., an ornamental, edible and medicinal plant.

Li M, Xiao T, Zhang Y Mitochondrial DNA B Resour. 2023; 8(11):1253-1257.

PMID: 38026495 PMC: 10653761. DOI: 10.1080/23802359.2023.2281029.


The complete chloroplast genome sequence of S. Q. Tong & Y. M. Xia (Zingiberaceae).

Wang X, Tian S, Wang H, Yang L, Zou X, Baskaran X Mitochondrial DNA B Resour. 2023; 8(6):699-703.

PMID: 37383606 PMC: 10294729. DOI: 10.1080/23802359.2023.2226256.

References
1.
Chen S, Yao H, Han J, Liu C, Song J, Shi L . Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS One. 2010; 5(1):e8613. PMC: 2799520. DOI: 10.1371/journal.pone.0008613. View

2.
Deng K, Deng R, Fan J, Chen E . Transcriptome analysis and development of simple sequence repeat (SSR) markers in Diels. Physiol Mol Biol Plants. 2018; 24(1):125-134. PMC: 5787116. DOI: 10.1007/s12298-017-0485-0. View

3.
Li X, Hu Z, Lin X, Li Q, Gao H, Luo G . [High-throughput pyrosequencing of the complete chloroplast genome of Magnolia officinalis and its application in species identification]. Yao Xue Xue Bao. 2012; 47(1):124-30. View

4.
Nguyen L, Schmidt H, von Haeseler A, Minh B . IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 2014; 32(1):268-74. PMC: 4271533. DOI: 10.1093/molbev/msu300. View

5.
Hebert P, Cywinska A, Ball S, deWaard J . Biological identifications through DNA barcodes. Proc Biol Sci. 2003; 270(1512):313-21. PMC: 1691236. DOI: 10.1098/rspb.2002.2218. View