Recent Advances in the Prediction of Subcellular Localization of Proteins and Related Topics
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Prediction of subcellular localization of proteins from their amino acid sequences has a long history in bioinformatics and is still actively developing, incorporating the latest advances in machine learning and proteomics. Notably, deep learning-based methods for natural language processing have made great contributions. Here, we review recent advances in the field as well as its related fields, such as subcellular proteomics and the prediction/recognition of subcellular localization from image data.
Impact of Alignments on the Accuracy of Protein Subcellular Localization Predictions.
Gillani M, Pollastri G Proteins. 2024; 93(3):745-759.
PMID: 39575640 PMC: 11809130. DOI: 10.1002/prot.26767.
Gang J, Ping Y, Du C Curr Microbiol. 2024; 81(11):379.
PMID: 39340701 DOI: 10.1007/s00284-024-03898-0.
Hu G, Moon J, Hayashi T J Phys Chem B. 2024; 128(35):8423-8436.
PMID: 39185763 PMC: 11382266. DOI: 10.1021/acs.jpcb.4c02461.
SCLpred-ECL: Subcellular Localization Prediction by Deep N-to-1 Convolutional Neural Networks.
Gillani M, Pollastri G Int J Mol Sci. 2024; 25(10).
PMID: 38791479 PMC: 11121631. DOI: 10.3390/ijms25105440.
Protein subcellular localization prediction tools.
Gillani M, Pollastri G Comput Struct Biotechnol J. 2024; 23:1796-1807.
PMID: 38707539 PMC: 11066471. DOI: 10.1016/j.csbj.2024.04.032.