» Articles » PMID: 36188220

A Cuproptosis-related LncRNA Signature Identified Prognosis and Tumour Immune Microenvironment in Kidney Renal Clear Cell Carcinoma

Overview
Specialty Biology
Date 2022 Oct 3
PMID 36188220
Authors
Affiliations
Soon will be listed here.
Abstract

Kidney renal clear cell carcinoma (KIRC) is a heterogeneous malignant tumor with high incidence, metastasis, and mortality. The imbalance of copper homeostasis can produce cytotoxicity and cause cell damage. At the same time, copper can also induce tumor cell death and inhibit tumor transformation. The latest research found that this copper-induced cell death is different from the known cell death pathway, so it is defined as cuproptosis. We included 539 KIRC samples and 72 normal tissues from the Cancer Genome Atlas (TCGA) in our study. After identifying long non-coding RNAs (lncRNAs) significantly associated with cuproptosis, we clustered 526 KIRC samples based on the prognostic lncRNAs and obtained two different patterns (Cuproptosis.C1 and C2). C1 indicated an obviously worse prognostic outcome and possessed a higher immune score and immune cell infiltration level. Moreover, a prognosis signature (CRGscore) was constructed to effectively and accurately evaluate the overall survival (OS) of KIRC patients. There were significant differences in tumor immune microenvironment (TIME) and tumor mutation burden (TMB) between CRGscore-defined groups. CRGscore also has the potential to predict medicine efficacy.

Citing Articles

Non-coding transcriptome profiles in clear-cell renal cell carcinoma.

Tesarova T, Fiala O, Hora M, Vaclavikova R Nat Rev Urol. 2024; 22(3):151-174.

PMID: 39242964 DOI: 10.1038/s41585-024-00926-3.


Bioinformatics analysis and experimental validation of m6A and cuproptosis-related lncRNA NFE4 in clear cell renal cell carcinoma.

Feng R, Li H, Meng T, Fei M, Yang C Discov Oncol. 2024; 15(1):187.

PMID: 38797784 PMC: 11128431. DOI: 10.1007/s12672-024-01023-y.


Identification of a lactate metabolism-related lncRNAs signature for predicting the prognosis in patients with kidney renal clear cell carcinoma.

Xu T, Liu Y, Ning B, Luo M, Wei Y Transl Androl Urol. 2024; 13(4):509-525.

PMID: 38721281 PMC: 11074680. DOI: 10.21037/tau-23-483.


Comprehensive analysis of the role of cuproptosis-related genes in the prognosis and immune infiltration of adrenocortical Carcinoma.

You Z, He J, Gao Z Heliyon. 2024; 10(1):e23661.

PMID: 38187219 PMC: 10767392. DOI: 10.1016/j.heliyon.2023.e23661.


Cuproptosis-related long noncoding RNAs predicts overall survival and reveal immune microenvironment of bladder cancer.

Wang H, Lv Z, Xia H, Tang R, Liu M, Wang J Heliyon. 2023; 9(12):e21153.

PMID: 38094043 PMC: 10716473. DOI: 10.1016/j.heliyon.2023.e21153.


References
1.
Ravindranathan D, Alhalabi O, Rafei H, Shah A, Bilen M . Landscape of Immunotherapy in Genitourinary Malignancies. Adv Exp Med Biol. 2022; 1342:143-192. PMC: 11235092. DOI: 10.1007/978-3-030-79308-1_5. View

2.
Xu W, Jiang X, Guan C, Gu M . The prognostic and predictive value of tumor infiltrating Macrophage and Neutrophil in patient with clear cell renal cell carcinoma: Tumor infiltrating lymphocytes in renal cell carcinoma. Medicine (Baltimore). 2020; 99(46):e23181. PMC: 7668475. DOI: 10.1097/MD.0000000000023181. View

3.
Xu F, Guan Y, Xue L, Huang S, Gao K, Yang Z . The effect of a novel glycolysis-related gene signature on progression, prognosis and immune microenvironment of renal cell carcinoma. BMC Cancer. 2020; 20(1):1207. PMC: 7720455. DOI: 10.1186/s12885-020-07702-7. View

4.
Hsieh J, Purdue M, Signoretti S, Swanton C, Albiges L, Schmidinger M . Renal cell carcinoma. Nat Rev Dis Primers. 2017; 3:17009. PMC: 5936048. DOI: 10.1038/nrdp.2017.9. View

5.
Rosner B, Glynn R, Ting Lee M . Incorporation of clustering effects for the Wilcoxon rank sum test: a large-sample approach. Biometrics. 2004; 59(4):1089-98. DOI: 10.1111/j.0006-341x.2003.00125.x. View