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Interactive Exploration of a Global Clinical Network from a Large Breast Cancer Cohort

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Journal NPJ Digit Med
Date 2022 Aug 10
PMID 35948579
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Abstract

Despite unprecedented amount of information now available in medical records, health data remain underexploited due to their heterogeneity and complexity. Simple charts and hypothesis-driven statistics can no longer apprehend the content of information-rich clinical data. There is, therefore, a clear need for powerful interactive visualization tools enabling medical practitioners to perceive the patterns and insights gained by state-of-the-art machine learning algorithms. Here, we report an interactive graphical interface for use as the front end of a machine learning causal inference server (MIIC), to facilitate the visualization and comprehension by clinicians of relationships between clinically relevant variables. The widespread use of such tools, facilitating the interactive exploration of datasets, is crucial both for data visualization and for the generation of research hypotheses. We demonstrate the utility of the MIIC interactive interface, by exploring the clinical network of a large cohort of breast cancer patients treated with neoadjuvant chemotherapy (NAC). This example highlights, in particular, the direct and indirect links between post-NAC clinical responses and patient survival. The MIIC interactive graphical interface has the potential to help clinicians identify actionable nodes and edges in clinical networks, thereby ultimately improving the patient care pathway.

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References
1.
Snell C, Gough M, Middleton K, Hsieh M, Furnas L, Seidl B . Absent progesterone receptor expression in the lymph node metastases of ER-positive, HER2-negative breast cancer is associated with relapse on tamoxifen. J Clin Pathol. 2017; 70(11):954-960. DOI: 10.1136/jclinpath-2016-204304. View

2.
Ola O, Sedig K . Beyond simple charts: Design of visualizations for big health data. Online J Public Health Inform. 2017; 8(3):e195. PMC: 5302463. DOI: 10.5210/ojphi.v8i3.7100. View

3.
Happe A, Drezen E . A visual approach of care pathways from the French nationwide SNDS database - from population to individual records: the ePEPS toolbox. Fundam Clin Pharmacol. 2017; 32(1):81-84. DOI: 10.1111/fcp.12324. View

4.
. [Recommendations for the immunohistochemistry of the hormonal receptors on paraffin sections in breast cancer. Update 1999. Group for Evaluation of Prognostic Factors using Immunohistochemistry in Breast Cancer (GEFPICS-FNCLCC)]. Ann Pathol. 1999; 19(4):336-43. View

5.
Sella N, Verny L, Uguzzoni G, Affeldt S, Isambert H . MIIC online: a web server to reconstruct causal or non-causal networks from non-perturbative data. Bioinformatics. 2018; 34(13):2311-2313. DOI: 10.1093/bioinformatics/btx844. View