» Articles » PMID: 35800109

The Complete Mitochondrial Genome of (Hymenoptera: Platygastridae): A Novel TRNA Secondary Structure, Gene Rearrangements and Phylogenetic Implications

Overview
Date 2022 Jul 8
PMID 35800109
Authors
Affiliations
Soon will be listed here.
Abstract

is economically important as a highly specific parasitoid of the invasive pest which was introduced into the Euro-Asia region in the last decade. Despite being a critical and specific parasitoid of the invasive pest and its use as an effective biocontrol agent, the absence of sequence information from have limited its genetic applications for pest management in forests. Mitochondrial (mt) genomes generally contain abundant nucleotide information and thus are helpful for understanding species history. Here, we sequenced the complete mt genome of using next generation sequencing, and annotated 13 protein-coding, 22 tRNA, and 2 rRNA genes and a 702 bp noncoding region. Comparative analysis indicated that this mt genome has a normal A + T content and codons use, however possessed both the expected and unique rearrangements. Ten tRNAs at four gene blocks and the A + T-rich region were rearranged, including gene shuffles, transpositions and inversions. Notably, two genes and had undergone long-range inversions, which is the first record of this rearrangement type in the superfamily Platygastroidea. The D-loops of both and were absent from the tRNA secondary structure, which has not been reported from hymenopteran previously. Phylogenetic analysis based with the maximum likelihood and Bayesian methods showed that grouped with other species of Platygastridae, and that the superfamily Platygastridea is sister to the other Proctotrupomorpha superfamilies. Our tree strongly supports the monophyly of the five superfamilies of Proctotrupomorpha. This study discovered some unique characters of , and contributes to our understanding of genome rearrangements in the order Hymenoptera.

Citing Articles

Characterization of the Mitogenome of the Genus Ratzeburg (Hymenoptera: Megaspilidae) with the Specific Designed Primers.

Wang X, Zhao W, Cui S, Su B, Huang Y, Chen H Animals (Basel). 2024; 14(10).

PMID: 38791671 PMC: 11117285. DOI: 10.3390/ani14101454.


Mitochondrial genome provides species-specific targets for the rapid detection of early invasive populations of Hylurgus ligniperda in China.

Li C, Wang B, Ji Y, Huang L, Wang X, Zhao W BMC Genomics. 2024; 25(1):90.

PMID: 38254044 PMC: 10804472. DOI: 10.1186/s12864-024-10011-z.


The Complete Mitochondrial Genome of (Mollusca: Bivalvia), Novel Gene Rearrangements, and the Phylogenetic Relationships of Mytilidae.

Xu M, Gu Z, Huang J, Guo B, Jiang L, Xu K Genes (Basel). 2023; 14(4).

PMID: 37107667 PMC: 10137486. DOI: 10.3390/genes14040910.


Complete Mitogenomes of Ticks and Parasitizing Giant Panda: Deep Insights into the Comparative Mitogenomic and Phylogenetic Relationship of Ixodidae Species.

Liu J, Yu J, Yu X, Bi W, Yang H, Xue F Genes (Basel). 2022; 13(11).

PMID: 36360286 PMC: 9691169. DOI: 10.3390/genes13112049.

References
1.
Dowton M, Campbell N . Intramitochondrial recombination - is it why some mitochondrial genes sleep around?. Trends Ecol Evol. 2001; 16(6):269-271. DOI: 10.1016/s0169-5347(01)02182-6. View

2.
Boore J . Animal mitochondrial genomes. Nucleic Acids Res. 1999; 27(8):1767-80. PMC: 148383. DOI: 10.1093/nar/27.8.1767. View

3.
Shen Z, Chen L, Chen L, Li Y . Information from the mitochondrial genomes of two egg parasitoids, Gonatocerus sp. and Telenomus sp., reveals a controversial phylogenetic relationship between Mymaridae and Scelionidae. Genomics. 2019; 111(5):1059-1065. DOI: 10.1016/j.ygeno.2018.06.009. View

4.
Tang P, Zhu J, Zheng B, Wei S, Sharkey M, Chen X . Mitochondrial phylogenomics of the Hymenoptera. Mol Phylogenet Evol. 2018; 131:8-18. DOI: 10.1016/j.ympev.2018.10.040. View

5.
Wei S, Shi M, Chen X, Sharkey M, van Achterberg C, Ye G . New views on strand asymmetry in insect mitochondrial genomes. PLoS One. 2010; 5(9):e12708. PMC: 2939890. DOI: 10.1371/journal.pone.0012708. View