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MrBayes 3: Bayesian Phylogenetic Inference Under Mixed Models

Overview
Journal Bioinformatics
Publisher Oxford University Press
Specialty Biology
Date 2003 Aug 13
PMID 12912839
Citations 8146
Authors
Fredrik Ronquist
John P Huelsenbeck
Affiliations
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Abstract

MrBayes 3 performs Bayesian phylogenetic analysis combining information from different data partitions or subsets evolving under different stochastic evolutionary models. This allows the user to analyze heterogeneous data sets consisting of different data types-e.g. morphological, nucleotide, and protein-and to explore a wide variety of structured models mixing partition-unique and shared parameters. The program employs MPI to parallelize Metropolis coupling on Macintosh or UNIX clusters.

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