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Calculating Bond Dissociation Energies of X-H (X=C, N, O, S) Bonds of Aromatic Systems Via Density Functional Theory: a Detailed Comparison of Methods

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Journal R Soc Open Sci
Specialty Science
Date 2022 Jun 16
PMID 35706655
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Abstract

In this study, the performance of 17 different density functional theory functionals was compared for the calculation of the bond dissociation energy (BDE) values of X-H (X=C, N, O, S) bonds of aromatic compounds. The effect of the size of the basis set (expansions of 6-31(G)) was also assessed for the initial geometry and zero-point energy calculations, followed by the single-point BDE calculations with different model chemistries with the 6-311 + (3df,2p) basis set. It was found that the size of the basis set for geometry optimization has a much smaller effect on the accuracy of BDE than the choice of functional for the following single-point calculations. The M06-2X, M05-2X and M08-HX functionals yielded highly accurate BDE values compared to experimental data (with the average mean unsigned error MUE = 1.2-1.5 kcal mol), performing better than any of the other functionals. The results suggest that geometry optimization may be performed with B3LYP functional and a small basis set, whereas the M06-2X, M05-2X and M08-HX density functionals with a suitably large basis set offer the best method for calculating BDEs of ArX-H (X=C, N, O, S) bonds.

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References
1.
Zhao Y, Schultz N, Truhlar D . Design of Density Functionals by Combining the Method of Constraint Satisfaction with Parametrization for Thermochemistry, Thermochemical Kinetics, and Noncovalent Interactions. J Chem Theory Comput. 2015; 2(2):364-82. DOI: 10.1021/ct0502763. View

2.
de Souza G, Peterson K . Benchmarking Antioxidant-Related Properties for Gallic Acid through the Use of DFT, MP2, CCSD, and CCSD(T) Approaches. J Phys Chem A. 2021; 125(1):198-208. DOI: 10.1021/acs.jpca.0c09116. View

3.
Galano A, Alvarez-Idaboy J . Kinetics of radical-molecule reactions in aqueous solution: a benchmark study of the performance of density functional methods. J Comput Chem. 2014; 35(28):2019-26. DOI: 10.1002/jcc.23715. View

4.
Vo Q, Hoa N, Nam P, Quang D, Mechler A . In Silico Evaluation of the Radical Scavenging Mechanism of Mactanamide. ACS Omega. 2020; 5(37):24106-24110. PMC: 7513356. DOI: 10.1021/acsomega.0c03646. View

5.
Carbonniere P, Lucca T, Pouchan C, Rega N, Barone V . Vibrational computations beyond the harmonic approximation: performances of the B3LYP density functional for semirigid molecules. J Comput Chem. 2005; 26(4):384-8. DOI: 10.1002/jcc.20170. View