» Articles » PMID: 35684207

Phylogeny and Expression Atlas of the in Agave

Overview
Journal Plants (Basel)
Date 2022 Jun 10
PMID 35684207
Authors
Affiliations
Soon will be listed here.
Abstract

species are widely cultivated crassulacean acid metabolism (CAM) plants for alcoholic beverages, food and fiber production. Among these, the hybrid H11648 (( × ) × ) is the main cultivar for sisal fiber in the tropical areas of Brazil, China, and African countries. The plants of hybrid H11648 have a long life cycle and large leaves, which require a huge amount of nitrogen nutrient. However, the molecular basis of nitrogen transport and allocation has not been well understood in agave. In this study, we identified 19 /() genes (called ) with full-length coding sequences in hybrid H11648. Our analysis of gene expression in various types of tissues revealed the tissue-specific expression pattern of . We further examined their expression patterns at different leaf developmental stages, under abiotic/biotic stresses and nutrient deficiency. The results reveal several candidate regulators in the agave family, including // We first characterized the genes in agave based on published leaf transcriptome datasets and emphasized their potential functions. The study will benefit future studies related to nitrogen nutrient in agave.

Citing Articles

Transcriptome Sequencing of Reveals Shoot-Related Expression Patterns of Genes in .

Wang X, Huang X, Chen L, Xie Z, Tan S, Qin X Plants (Basel). 2023; 12(10).

PMID: 37653937 PMC: 10222593. DOI: 10.3390/plants12102020.


Genome-Wide Identification and Expression Analysis of Genes in Cucumber ( L.).

Zhang M, Zhang W, Zheng Z, Zhang Z, Hua B, Liu J Plants (Basel). 2023; 12(6).

PMID: 36986940 PMC: 10057324. DOI: 10.3390/plants12061252.


Identification and Expression Analysis of the Genes in Cotton.

Dong Q, Wang G, Iqbal A, Muhammad N, Wang X, Gui H Int J Mol Sci. 2022; 23(22).

PMID: 36430741 PMC: 9692789. DOI: 10.3390/ijms232214262.

References
1.
Wen J, Li P, Ran F, Guo P, Zhu J, Yang J . Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus. BMC Genomics. 2020; 21(1):871. PMC: 7720588. DOI: 10.1186/s12864-020-07274-7. View

2.
Wang Y, Cheng Y, Chen K, Tsay Y . Nitrate Transport, Signaling, and Use Efficiency. Annu Rev Plant Biol. 2018; 69:85-122. DOI: 10.1146/annurev-arplant-042817-040056. View

3.
Zhang G, Meng S, Gong J . The Expected and Unexpected Roles of Nitrate Transporters in Plant Abiotic Stress Resistance and Their Regulation. Int J Mol Sci. 2018; 19(11). PMC: 6274899. DOI: 10.3390/ijms19113535. View

4.
Beltran-Garcia M, White Jr J, Prado F, Prieto K, Yamaguchi L, Torres M . Nitrogen acquisition in Agave tequilana from degradation of endophytic bacteria. Sci Rep. 2014; 4:6938. PMC: 4221784. DOI: 10.1038/srep06938. View

5.
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S . MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 2011; 28(10):2731-9. PMC: 3203626. DOI: 10.1093/molbev/msr121. View