» Articles » PMID: 35627245

Genome-Wide Identification of the Gene Family in Upland Cotton ( L.) and Expression Analysis in Drought Stress Treatments

Overview
Journal Genes (Basel)
Publisher MDPI
Date 2022 May 28
PMID 35627245
Authors
Affiliations
Soon will be listed here.
Abstract

Cotton is an important commercial crop whose growth and yield are severely affected by drought. S-adenosylmethionine (SAM) is widely involved in the plant stress response and growth regulation; however, the role of the S-adenosylmethionine synthase () gene family in this process is poorly understood. Here, we systematically analyzed the expression of genes in Upland Cotton ( L.). A total of 16 genes were identified, each with a similar predicted structure. A large number of cis-acting elements involved in the response to abiotic stress were predicted based on promoter analysis, indicating a likely important role in abiotic stress responses. The results of qRT-PCR validation showed that genes had different expression patterns after drought stress and in response to drought stress. Analysis of a selected subset of genes showed increased expression in cultivar Xinluzhong 39 (drought resistant) when compared to cultivar Xinluzao 26 (drought-sensitive) upland cotton. This study provides important relevant information for further study of genes in drought resistance research of upland cotton, which is helpful for drought-resistance improvement of upland cotton.

Citing Articles

Pan-genome wide identification and analysis of the gene family in sunflowers ( L.) revealed their intraspecies diversity and potential roles in abiotic stress tolerance.

Zhang C, Li H, Yin J, Han Z, Liu X, Chen Y Front Plant Sci. 2024; 15:1499024.

PMID: 39606674 PMC: 11598334. DOI: 10.3389/fpls.2024.1499024.


The White Clover TrMYB33-TrSAMS1 Module Contributes to Drought Tolerance by Modulation of Spermidine Biosynthesis via an ABA-Dependent Pathway.

Zhang Y, Qin X, He Z, Zhang Y, Li Z, Nie G Int J Mol Sci. 2024; 25(13).

PMID: 39000081 PMC: 11241196. DOI: 10.3390/ijms25136974.


A comprehensive review on resistance against cotton leaf curl virus.

Nadeem S, Ahmed S, Luqman T, Tan D, Maryum Z, Pervaiz Akhtar K Front Genet. 2024; 15:1306469.

PMID: 38440193 PMC: 10909863. DOI: 10.3389/fgene.2024.1306469.


Dissection of QTLs conferring drought tolerance in B. carinata derived B. juncea introgression lines.

Limbalkar O, Vasisth P, Singh G, Jain P, Sharma M, Singh R BMC Plant Biol. 2023; 23(1):664.

PMID: 38129793 PMC: 10740311. DOI: 10.1186/s12870-023-04614-z.

References
1.
Belak Z, Pickering J, Gillespie Z, Audette G, Eramian M, Mitchell J . Genes responsive to rapamycin and serum deprivation are clustered on chromosomes and undergo reorganization within local chromatin environments. Biochem Cell Biol. 2019; 98(2):178-190. DOI: 10.1139/bcb-2019-0096. View

2.
Finn R, Clements J, Eddy S . HMMER web server: interactive sequence similarity searching. Nucleic Acids Res. 2011; 39(Web Server issue):W29-37. PMC: 3125773. DOI: 10.1093/nar/gkr367. View

3.
Krendel M, Mooseker M . Myosins: tails (and heads) of functional diversity. Physiology (Bethesda). 2005; 20:239-51. DOI: 10.1152/physiol.00014.2005. View

4.
Li B, He L, Guo S, Li J, Yang Y, Yan B . Proteomics reveal cucumber Spd-responses under normal condition and salt stress. Plant Physiol Biochem. 2013; 67:7-14. DOI: 10.1016/j.plaphy.2013.02.016. View

5.
Cheng M, Hsieh E, Chen J, Chen H, Lin T . Arabidopsis RGLG2, functioning as a RING E3 ligase, interacts with AtERF53 and negatively regulates the plant drought stress response. Plant Physiol. 2011; 158(1):363-75. PMC: 3252077. DOI: 10.1104/pp.111.189738. View