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Xist-mediated Silencing Requires Additive Functions of SPEN and Polycomb Together with Differentiation-dependent Recruitment of SmcHD1

Overview
Journal Cell Rep
Publisher Cell Press
Date 2022 May 18
PMID 35584662
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Abstract

X chromosome inactivation (XCI) is mediated by the non-coding RNA Xist, which directs chromatin modification and gene silencing in cis. The RNA binding protein SPEN and associated corepressors have a central role in Xist-mediated gene silencing. Other silencing factors, notably the Polycomb system, have been reported to function downstream of SPEN. In recent work, we found that SPEN has an additional role in correct localization of Xist RNA in cis, indicating that its contribution to chromatin-mediated gene silencing needs to be reappraised. Making use of a SPEN separation-of-function mutation, we show that SPEN and Polycomb pathways, in fact, function in parallel to establish gene silencing. We also find that differentiation-dependent recruitment of the chromosomal protein SmcHD1 is required for silencing many X-linked genes. Our results provide important insights into the mechanism of X inactivation and the coordination of chromatin-based gene regulation with cellular differentiation and development.

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References
1.
Nozawa R, Nagao K, Igami K, Shibata S, Shirai N, Nozaki N . Human inactive X chromosome is compacted through a PRC2-independent SMCHD1-HBiX1 pathway. Nat Struct Mol Biol. 2013; 20(5):566-73. DOI: 10.1038/nsmb.2532. View

2.
Posynick B, Brown C . Escape From X-Chromosome Inactivation: An Evolutionary Perspective. Front Cell Dev Biol. 2019; 7:241. PMC: 6817483. DOI: 10.3389/fcell.2019.00241. View

3.
Penny G, Kay G, Sheardown S, Rastan S, Brockdorff N . Requirement for Xist in X chromosome inactivation. Nature. 1996; 379(6561):131-7. DOI: 10.1038/379131a0. View

4.
Moindrot B, Cerase A, Coker H, Masui O, Grijzenhout A, Pintacuda G . A Pooled shRNA Screen Identifies Rbm15, Spen, and Wtap as Factors Required for Xist RNA-Mediated Silencing. Cell Rep. 2015; 12(4):562-72. PMC: 4534822. DOI: 10.1016/j.celrep.2015.06.053. View

5.
Dobin A, Davis C, Schlesinger F, Drenkow J, Zaleski C, Jha S . STAR: ultrafast universal RNA-seq aligner. Bioinformatics. 2012; 29(1):15-21. PMC: 3530905. DOI: 10.1093/bioinformatics/bts635. View