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Structural Basis of Dynamic P5CS Filaments

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Journal Elife
Specialty Biology
Date 2022 Mar 14
PMID 35286254
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Abstract

The bifunctional enzyme Δ-pyrroline-5-carboxylate synthase (P5CS) is vital to the synthesis of proline and ornithine, playing an essential role in human health and agriculture. Pathogenic mutations in the P5CS gene (ALDH18A1) lead to neurocutaneous syndrome and skin relaxation connective tissue disease in humans, and P5CS deficiency seriously damages the ability to resist adversity in plants. We have recently found that P5CS forms cytoophidia in vivo and filaments in vitro. However, it is difficult to appreciate the function of P5CS filamentation without precise structures. Using cryo-electron microscopy, here we solve the structures of full-length P5CS in three states at resolution from 3.1 to 4.3 Å. We observe distinct ligand-binding states and conformational changes for the GK and GPR domains, respectively. Divergent helical filaments are assembled by P5CS tetramers and stabilized by multiple interfaces. Point mutations disturbing those interfaces prevent P5CS filamentation and greatly reduce the enzymatic activity. Our findings reveal that filamentation is crucial for the coordination between the GK and GPR domains, providing a structural basis for the catalytic function of P5CS filaments.

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References
1.
Adams P, Afonine P, Bunkoczi G, Chen V, Echols N, Headd J . The Phenix software for automated determination of macromolecular structures. Methods. 2011; 55(1):94-106. PMC: 3193589. DOI: 10.1016/j.ymeth.2011.07.005. View

2.
Liu Z, Sun Y, Rose J, Chung Y, Hsiao C, Chang W . The first structure of an aldehyde dehydrogenase reveals novel interactions between NAD and the Rossmann fold. Nat Struct Biol. 1997; 4(4):317-26. DOI: 10.1038/nsb0497-317. View

3.
Pettersen E, Goddard T, Huang C, Couch G, Greenblatt D, Meng E . UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem. 2004; 25(13):1605-12. DOI: 10.1002/jcc.20084. View

4.
Yang Z, Zhao X, Shang W, Liu Y, Ji J, Liu J . Pyrroline-5-carboxylate synthase senses cellular stress and modulates metabolism by regulating mitochondrial respiration. Cell Death Differ. 2020; 28(1):303-319. PMC: 7853148. DOI: 10.1038/s41418-020-0601-5. View

5.
Gamper H, Moses V . Enzyme organization in the proline biosynthetic pathway of Escherichia coli. Biochim Biophys Acta. 1974; 354(1):75-87. DOI: 10.1016/0304-4165(74)90055-5. View