» Articles » PMID: 35169113

Design of a Mutation-integrated Trimeric RBD with Broad Protection Against SARS-CoV-2

Abstract

The continuous emergence of SARS-CoV-2 variants highlights the need of developing vaccines with broad protection. Here, according to the immune-escape capability and evolutionary convergence, the representative SARS-CoV-2 strains carrying the hotspot mutations were selected. Then, guided by structural and computational analyses, we present a mutation-integrated trimeric form of spike receptor-binding domain (mutI-tri-RBD) as a broadly protective vaccine candidate, which combined heterologous RBDs from different representative strains into a hybrid immunogen and integrated immune-escape hotspots into a single antigen. When compared with a homo-tri-RBD vaccine candidate in the stage of phase II trial, of which all three RBDs are derived from the SARS-CoV-2 prototype strain, mutI-tri-RBD induced significantly higher neutralizing antibody titers against the Delta and Beta variants, and maintained a similar immune response against the prototype strain. Pseudo-virus neutralization assay demonstrated that mutI-tri-RBD also induced broadly strong neutralizing activities against all tested 23 SARS-CoV-2 variants. The in vivo protective capability of mutI-tri-RBD was further validated in hACE2-transgenic mice challenged by the live virus, and the results showed that mutI-tri-RBD provided potent protection not only against the SARS-CoV-2 prototype strain but also against the Delta and Beta variants.

Citing Articles

Expression, purification and immunogenicity analyses of receptor binding domain protein of severe acute respiratory syndrome coronavirus 2 from delta variant.

Liu L, Chen H, Liu P, Ke X, Song J, Fang Y Vet Res Forum. 2025; 15(12):657-663.

PMID: 39816631 PMC: 11729102. DOI: 10.30466/vrf.2024.2013858.4037.


A protein vaccine of RBD integrated with immune evasion mutation shows broad protection against SARS-CoV-2.

An R, Yang H, Tang C, Li Q, Huang Q, Wang H Signal Transduct Target Ther. 2024; 9(1):301.

PMID: 39500906 PMC: 11538548. DOI: 10.1038/s41392-024-02007-8.


Design of the conserved epitope peptide of SARS-CoV-2 spike protein as the broad-spectrum COVID-19 vaccine.

Chang T, Li C, Chao T, Chang S, Chang S Appl Microbiol Biotechnol. 2024; 108(1):486.

PMID: 39412657 PMC: 11485143. DOI: 10.1007/s00253-024-13331-y.


Development and characterization of a multimeric recombinant protein using the spike protein receptor binding domain as an antigen to induce SARS-CoV-2 neutralization.

de Lima V, Nunes J, Rosa D, Ferreira R, Oliva M, Andreata-Santos R Immun Inflamm Dis. 2024; 12(7):e1353.

PMID: 39056544 PMC: 11273545. DOI: 10.1002/iid3.1353.


Proactive vaccination using multiviral Quartet Nanocages to elicit broad anti-coronavirus responses.

Hills R, Tan T, Cohen A, Keeffe J, Keeble A, Gnanapragasam P Nat Nanotechnol. 2024; 19(8):1216-1223.

PMID: 38710880 PMC: 11329374. DOI: 10.1038/s41565-024-01655-9.


References
1.
Martinez D, Schafer A, Leist S, De la Cruz G, West A, Atochina-Vasserman E . Chimeric spike mRNA vaccines protect against Sarbecovirus challenge in mice. Science. 2021; 373(6558):991-998. PMC: 8899822. DOI: 10.1126/science.abi4506. View

2.
Pettersen E, Goddard T, Huang C, Couch G, Greenblatt D, Meng E . UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem. 2004; 25(13):1605-12. DOI: 10.1002/jcc.20084. View

3.
Shen M, Sali A . Statistical potential for assessment and prediction of protein structures. Protein Sci. 2006; 15(11):2507-24. PMC: 2242414. DOI: 10.1110/ps.062416606. View

4.
Yang J, Wang W, Chen Z, Lu S, Yang F, Bi Z . A vaccine targeting the RBD of the S protein of SARS-CoV-2 induces protective immunity. Nature. 2020; 586(7830):572-577. DOI: 10.1038/s41586-020-2599-8. View

5.
Greaney A, Loes A, Crawford K, Starr T, Malone K, Chu H . Comprehensive mapping of mutations in the SARS-CoV-2 receptor-binding domain that affect recognition by polyclonal human plasma antibodies. Cell Host Microbe. 2021; 29(3):463-476.e6. PMC: 7869748. DOI: 10.1016/j.chom.2021.02.003. View