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Temporal Fluctuations in Chemotaxis Gain Implement a Simulated-tempering Strategy for Efficient Navigation in Complex Environments

Overview
Journal iScience
Publisher Cell Press
Date 2021 Aug 4
PMID 34345809
Citations 5
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Abstract

Bacterial chemotaxis is a major testing ground for systems biology, including the role of fluctuations and individual variation. Individual bacteria vary in their tumbling frequency and adaptation time. Recently, large cell-cell variation was also discovered in chemotaxis gain, which determines the sensitivity of the tumbling rate to attractant gradients. Variation in gain is puzzling, because low gain impairs chemotactic velocity. Here, we provide a functional explanation for gain variation by establishing a formal analogy between chemotaxis and algorithms for sampling probability distributions. We show that temporal fluctuations in gain implement simulated tempering, which allows sampling of attractant distributions with many local peaks. Periods of high gain allow bacteria to detect and climb gradients quickly, and periods of low gain allow them to move to new peaks. Gain fluctuations thus allow bacteria to thrive in complex environments, and more generally they may play an important functional role for organism navigation.

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References
1.
Palyulin V, Chechkin A, Metzler R . Levy flights do not always optimize random blind search for sparse targets. Proc Natl Acad Sci U S A. 2014; 111(8):2931-6. PMC: 3939908. DOI: 10.1073/pnas.1320424111. View

2.
Luo L, Cook N, Venkatachalam V, Martinez-Velazquez L, Zhang X, Calvo A . Bidirectional thermotaxis in Caenorhabditis elegans is mediated by distinct sensorimotor strategies driven by the AFD thermosensory neurons. Proc Natl Acad Sci U S A. 2014; 111(7):2776-81. PMC: 3932917. DOI: 10.1073/pnas.1315205111. View

3.
Dufour Y, Fu X, Hernandez-Nunez L, Emonet T . Limits of feedback control in bacterial chemotaxis. PLoS Comput Biol. 2014; 10(6):e1003694. PMC: 4072517. DOI: 10.1371/journal.pcbi.1003694. View

4.
Kiorboe T, Grossart H, Ploug H, Tang K . Mechanisms and rates of bacterial colonization of sinking aggregates. Appl Environ Microbiol. 2002; 68(8):3996-4006. PMC: 124032. DOI: 10.1128/AEM.68.8.3996-4006.2002. View

5.
Ackermann M . A functional perspective on phenotypic heterogeneity in microorganisms. Nat Rev Microbiol. 2015; 13(8):497-508. DOI: 10.1038/nrmicro3491. View