Ten Simple Rules to Cultivate Transdisciplinary Collaboration in Data Science

Overview

Journal PLoS Comput Biol

Specialty Biology

Date 2021 May 13

PMID 33983959

Citations 5

Authors

Faryad Sahneh

Meghan A Balk

Marina Kisley

Chi-Kwan Chan

Mercury Fox

Brian Nord

Eric Lyons

Tyson Swetnam

Daniela Huppenkothen

Will Sutherland

Ramona L Walls

Daven P Quinn

Tonantzin Tarin

David LeBauer

David Ribes

Dunbar P Birnie 3rd

Carol Lushbough

Eric Carr

Grey Nearing

Jeremy Fischer

Kevin Tyle

Luis Carrasco

Meagan Lang

Peter W Rose

Richard R Rushforth

Samapriya Roy

Thomas Matheson

Tina Lee

C Titus Brown

Tracy K Teal

Monica Papes

Stephen Kobourov

Nirav Merchant

Affiliations

Soon will be listed here.

Citing Articles

CyVerse: Cyberinfrastructure for open science.

Swetnam T, Antin P, Bartelme R, Bucksch A, Camhy D, Chism G PLoS Comput Biol. 2024; 20(2):e1011270.

PMID: 38324613 PMC: 10878509. DOI: 10.1371/journal.pcbi.1011270.

Ten simple rules for humane data science.

Masum H, Bourne P PLoS Comput Biol. 2023; 19(12):e1011698.

PMID: 38127691 PMC: 10734991. DOI: 10.1371/journal.pcbi.1011698.

Inclusive collaboration across plant physiology and genomics: Now is the time!.

Plant Direct. 2023; 7(5):e493.

PMID: 37214275 PMC: 10192722. DOI: 10.1002/pld3.493.

Ten quick tips for sequence-based prediction of protein properties using machine learning.

Hou Q, Waury K, Gogishvili D, Feenstra K PLoS Comput Biol. 2022; 18(12):e1010669.

PMID: 36454728 PMC: 9714715. DOI: 10.1371/journal.pcbi.1010669.

Ten simple rules to cultivate belonging in collaborative data science research teams.

Gaynor K, Azevedo T, Boyajian C, Brun J, Budden A, Cole A PLoS Comput Biol. 2022; 18(11):e1010567.

PMID: 36327241 PMC: 9632775. DOI: 10.1371/journal.pcbi.1010567.

References

Hollmann S, Frohme M, Endrullat C, Kremer A, DElia D, Regierer B . Ten simple rules on how to write a standard operating procedure. PLoS Comput Biol. 2020; 16(9):e1008095. PMC: 7470745. DOI: 10.1371/journal.pcbi.1008095. View

Kell D, Oliver S . Here is the evidence, now what is the hypothesis? The complementary roles of inductive and hypothesis-driven science in the post-genomic era. Bioessays. 2003; 26(1):99-105. DOI: 10.1002/bies.10385. View

Reiter T, Brooks P, Irber L, Joslin S, Reid C, Scott C . Streamlining data-intensive biology with workflow systems. Gigascience. 2021; 10(1). PMC: 8631065. DOI: 10.1093/gigascience/giaa140. View

Wilkinson M, Dumontier M, Aalbersberg I, Appleton G, Axton M, Baak A . The FAIR Guiding Principles for scientific data management and stewardship. Sci Data. 2016; 3:160018. PMC: 4792175. DOI: 10.1038/sdata.2016.18. View

Huppenkothen D, Arendt A, Hogg D, Ram K, Vanderplas J, Rokem A . Hack weeks as a model for data science education and collaboration. Proc Natl Acad Sci U S A. 2018; 115(36):8872-8877. PMC: 6130377. DOI: 10.1073/pnas.1717196115. View

Choi B, Pak A . Multidisciplinarity, interdisciplinarity and transdisciplinarity in health research, services, education and policy: 1. Definitions, objectives, and evidence of effectiveness. Clin Invest Med. 2007; 29(6):351-64. View

Masum H, Rao A, Good B, Todd M, Edwards A, Chan L . Ten simple rules for cultivating open science and collaborative R&D. PLoS Comput Biol. 2013; 9(9):e1003244. PMC: 3784487. DOI: 10.1371/journal.pcbi.1003244. View

Vicens Q, Bourne P . Ten simple rules for a successful collaboration. PLoS Comput Biol. 2007; 3(3):e44. PMC: 1847992. DOI: 10.1371/journal.pcbi.0030044. View

Perkel J . Workflow systems turn raw data into scientific knowledge. Nature. 2019; 573(7772):149-150. DOI: 10.1038/d41586-019-02619-z. View

10.

Allen C, Mehler D . Open science challenges, benefits and tips in early career and beyond. PLoS Biol. 2019; 17(5):e3000246. PMC: 6513108. DOI: 10.1371/journal.pbio.3000246. View

11.

Knapp B, Bardenet R, Bernabeu M, Bordas R, Bruna M, Calderhead B . Ten simple rules for a successful cross-disciplinary collaboration. PLoS Comput Biol. 2015; 11(4):e1004214. PMC: 4415777. DOI: 10.1371/journal.pcbi.1004214. View

12.

Ferrero E, Brachat S, Jenkins J, Marc P, Skewes-Cox P, Altshuler R . Ten simple rules to power drug discovery with data science. PLoS Comput Biol. 2020; 16(8):e1008126. PMC: 7451597. DOI: 10.1371/journal.pcbi.1008126. View

13.

Darley J, Latane B . Bystander intervention in emergencies: diffusion of responsibility. J Pers Soc Psychol. 1968; 8(4):377-83. DOI: 10.1037/h0025589. View

14.

Rule A, Birmingham A, Zuniga C, Altintas I, Huang S, Knight R . Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks. PLoS Comput Biol. 2019; 15(7):e1007007. PMC: 6657818. DOI: 10.1371/journal.pcbi.1007007. View

15.

Wulf W . The collaboratory opportunity. Science. 1993; 261(5123):854-5. DOI: 10.1126/science.8346438. View