» Articles » PMID: 33815344

Ribosome Rescue Pathways in Bacteria

Overview
Journal Front Microbiol
Specialty Microbiology
Date 2021 Apr 5
PMID 33815344
Citations 31
Authors
Affiliations
Soon will be listed here.
Abstract

Ribosomes that become stalled on truncated or damaged mRNAs during protein synthesis must be rescued for the cell to survive. Bacteria have evolved a diverse array of rescue pathways to remove the stalled ribosomes from the aberrant mRNA and return them to the free pool of actively translating ribosomes. In addition, some of these pathways target the damaged mRNA and the incomplete nascent polypeptide chain for degradation. This review highlights the recent developments in our mechanistic understanding of bacterial ribosomal rescue systems, including drop-off, -translation mediated by transfer-messenger RNA and small protein B, ribosome rescue by the alternative rescue factors ArfA and ArfB, as well as ribosome rescue factor A, an additional rescue system found in some Gram-positive bacteria, such as . Finally, we discuss the recent findings of ribosome-associated quality control in particular bacterial lineages mediated by RqcH and RqcP. The importance of rescue pathways for bacterial survival suggests they may represent novel targets for the development of new antimicrobial agents against multi-drug resistant pathogenic bacteria.

Citing Articles

Trypanosoma cruzi has Two Peptidyl-tRNA Hydrolases Showing Different Localization and Function.

Resendiz-Juarez M, Rosas-Soto A, Perez-Rangel A, Tapia-Ramirez J, Rios-Castro E, Rodriguez-Cruz F Acta Parasitol. 2025; 70(1):60.

PMID: 39945942 DOI: 10.1007/s11686-025-00989-1.


Conserved GTPase OLA1 promotes efficient translation on D/E-rich mRNA.

Yu T, Li X, Dong W, Zhou Q, Li Q, Du Z Nat Commun. 2025; 16(1):1549.

PMID: 39934121 PMC: 11814078. DOI: 10.1038/s41467-025-56797-8.


The RNA helicase HrpA rescues collided ribosomes in E. coli.

Campbell A, Esser H, Burroughs A, Berninghausen O, Aravind L, Becker T Mol Cell. 2025; 85(5):999-1007.e7.

PMID: 39922193 PMC: 11890964. DOI: 10.1016/j.molcel.2025.01.018.


Stalled ribosome rescue factors exert different roles depending on types of antibiotics in Escherichia coli.

Mikami M, Shimizu H, Iwama N, Yajima M, Kuwasako K, Ogura Y NPJ Antimicrob Resist. 2025; 2(1):22.

PMID: 39843510 PMC: 11721466. DOI: 10.1038/s44259-024-00039-2.


Structural insights into context-dependent inhibitory mechanisms of chloramphenicol in cells.

Xue L, Spahn C, Schacherl M, Mahamid J Nat Struct Mol Biol. 2024; 32(2):257-267.

PMID: 39668257 PMC: 11832420. DOI: 10.1038/s41594-024-01441-0.


References
1.
Thomas E, Kim K, McHugh E, Marcinkiewicz T, Zaher H . Alkylative damage of mRNA leads to ribosome stalling and rescue by translation in bacteria. Elife. 2020; 9. PMC: 7521929. DOI: 10.7554/eLife.61984. View

2.
Asano K, Kurita D, Takada K, Konno T, Muto A, Himeno H . Competition between trans-translation and termination or elongation of translation. Nucleic Acids Res. 2005; 33(17):5544-52. PMC: 1243801. DOI: 10.1093/nar/gki871. View

3.
Flynn J, Levchenko I, Seidel M, Wickner S, Sauer R, Baker T . Overlapping recognition determinants within the ssrA degradation tag allow modulation of proteolysis. Proc Natl Acad Sci U S A. 2001; 98(19):10584-9. PMC: 58509. DOI: 10.1073/pnas.191375298. View

4.
Keiler K, Shapiro L . TmRNA is required for correct timing of DNA replication in Caulobacter crescentus. J Bacteriol. 2003; 185(2):573-80. PMC: 145339. DOI: 10.1128/JB.185.2.573-580.2003. View

5.
Wilson D, Arenz S, Beckmann R . Translation regulation via nascent polypeptide-mediated ribosome stalling. Curr Opin Struct Biol. 2016; 37:123-33. DOI: 10.1016/j.sbi.2016.01.008. View