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Current Achievements and Applications of Transcriptomics in Personalized Cancer Medicine

Overview
Journal Int J Mol Sci
Publisher MDPI
Date 2021 Feb 12
PMID 33572595
Citations 55
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Abstract

Over the last decades, transcriptome profiling emerged as one of the most powerful approaches in oncology, providing prognostic and predictive utility for cancer management. The development of novel technologies, such as revolutionary next-generation sequencing, enables the identification of cancer biomarkers, gene signatures, and their aberrant expression affecting oncogenesis, as well as the discovery of molecular targets for anticancer therapies. Transcriptomics contribute to a change in the holistic understanding of cancer, from histopathological and organic to molecular classifications, opening a more personalized perspective for tumor diagnostics and therapy. The further advancement on transcriptome profiling may allow standardization and cost reduction of its analysis, which will be the next step for transcriptomics to become a canon of contemporary cancer medicine.

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References
1.
Johann Jr D, Steliga M, Shin I, Yoon D, Arnaoutakis K, Hutchins L . Liquid biopsy and its role in an advanced clinical trial for lung cancer. Exp Biol Med (Maywood). 2018; 243(3):262-271. PMC: 5813874. DOI: 10.1177/1535370217750087. View

2.
Fan J, Lee H, Lee S, Ryu D, Lee S, Xue C . Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data. Genome Res. 2018; 28(8):1217-1227. PMC: 6071640. DOI: 10.1101/gr.228080.117. View

3.
Rodgers L, O hAinmhire E, Young A, Burdette J . Loss of PAX8 in high-grade serous ovarian cancer reduces cell survival despite unique modes of action in the fallopian tube and ovarian surface epithelium. Oncotarget. 2016; 7(22):32785-95. PMC: 5078051. DOI: 10.18632/oncotarget.9051. View

4.
Goldsworthy S, Goldsworthy T, Sprankle C, Butterworth B . Variation in expression of genes used for normalization of Northern blots after induction of cell proliferation. Cell Prolif. 1993; 26(6):511-8. DOI: 10.1111/j.1365-2184.1993.tb00029.x. View

5.
Cieslik M, Chinnaiyan A . Cancer transcriptome profiling at the juncture of clinical translation. Nat Rev Genet. 2017; 19(2):93-109. DOI: 10.1038/nrg.2017.96. View