» Articles » PMID: 33208749

Genome-enabled Discovery of Anthraquinone Biosynthesis in Senna Tora

Abstract

Senna tora is a widely used medicinal plant. Its health benefits have been attributed to the large quantity of anthraquinones, but how they are made in plants remains a mystery. To identify the genes responsible for plant anthraquinone biosynthesis, we reveal the genome sequence of S. tora at the chromosome level with 526 Mb (96%) assembled into 13 chromosomes. Comparison among related plant species shows that a chalcone synthase-like (CHS-L) gene family has lineage-specifically and rapidly expanded in S. tora. Combining genomics, transcriptomics, metabolomics, and biochemistry, we identify a CHS-L gene contributing to the biosynthesis of anthraquinones. The S. tora reference genome will accelerate the discovery of biologically active anthraquinone biosynthesis pathways in medicinal plants.

Citing Articles

Identification and characterization of compounds that improve plant photosynthesis and growth under light stress conditions.

Qu Y, Sakoda K, Wakabayashi Y, Nakajima M, Asami T, Terashima I Commun Biol. 2025; 8(1):300.

PMID: 40016402 PMC: 11868627. DOI: 10.1038/s42003-025-07582-2.


Chromosome-level genome assembly and improved annotation of onion genome (Allium cepa L.).

Cho H, Jung M, Lee S, Park J, Zoclanclounon Y, Kim C Sci Data. 2025; 12(1):336.

PMID: 40011550 PMC: 11865573. DOI: 10.1038/s41597-025-04635-3.


Tocotrienols in Eleven Species of Genus Leaves.

Lazdina D, Misina I, Gornas P Molecules. 2025; 30(3).

PMID: 39942766 PMC: 11821140. DOI: 10.3390/molecules30030662.


Microbial engineering for monocyclic aromatic compounds production.

Hu G, Gao C, Li X, Song W, Wu J FEMS Microbiol Rev. 2025; 49.

PMID: 39900471 PMC: 11837758. DOI: 10.1093/femsre/fuaf003.


De novo sequencing allows genome-wide identification of genes involved in galactomannan synthesis in locust bean (Ceratonia siliqua).

Akutsu M, Shinozawa A, Nishiyama T, Sakata Y, Hiwatashi Y DNA Res. 2024; 31(6).

PMID: 39673409 PMC: 11659883. DOI: 10.1093/dnares/dsae033.


References
1.
Roa-Linares V, Miranda-Brand Y, Tangarife-Castano V, Ochoa R, Garcia P, Castro M . Anti-Herpetic, Anti-Dengue and Antineoplastic Activities of Simple and Heterocycle-Fused Derivatives of Terpenyl-1,4-Naphthoquinone and 1,4-Anthraquinone. Molecules. 2019; 24(7). PMC: 6479402. DOI: 10.3390/molecules24071279. View

2.
Zhang C, Sun C, Huang H, Gui C, Wang L, Li Q . Biosynthetic Baeyer-Villiger Chemistry Enables Access to Two Anthracene Scaffolds from a Single Gene Cluster in Deep-Sea-Derived Streptomyces olivaceus SCSIO T05. J Nat Prod. 2018; 81(7):1570-1577. DOI: 10.1021/acs.jnatprod.8b00077. View

3.
Jayakodi M, Jung J, Park D, Ahn Y, Lee S, Shin S . Genome-wide characterization of long intergenic non-coding RNAs (lincRNAs) provides new insight into viral diseases in honey bees Apis cerana and Apis mellifera. BMC Genomics. 2015; 16:680. PMC: 4559890. DOI: 10.1186/s12864-015-1868-7. View

4.
Varshney R, Song C, Saxena R, Azam S, Yu S, Sharpe A . Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat Biotechnol. 2013; 31(3):240-6. DOI: 10.1038/nbt.2491. View

5.
Chin C, Peluso P, Sedlazeck F, Nattestad M, Concepcion G, Clum A . Phased diploid genome assembly with single-molecule real-time sequencing. Nat Methods. 2016; 13(12):1050-1054. PMC: 5503144. DOI: 10.1038/nmeth.4035. View