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Bacterial OTU Deubiquitinases Regulate Substrate Ubiquitination Upon Legionella Infection

Overview
Journal Elife
Specialty Biology
Date 2020 Nov 13
PMID 33185526
Citations 17
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Abstract

causes a severe pneumonia known as Legionnaires' disease. During the infection, Legionella injects more than 300 effector proteins into host cells. Among them are enzymes involved in altering the host-ubiquitination system. Here, we identified two egionellaU (ovarian tumor)-like deubiquitinases (LOT-DUBs; LotB [Lpg1621/Ceg23] and LotC [Lpg2529]). The crystal structure of the LotC catalytic core (LotC) was determined at 2.4 Å. Unlike the classical OTU-family, the LOT-family shows an extended helical lobe between the Cys-loop and the variable loop, which defines them as a unique class of OTU-DUBs. LotB has an additional ubiquitin-binding site (S1'), which enables the specific cleavage of Lys63-linked polyubiquitin chains. By contrast, LotC only contains the S1 site and cleaves different species of ubiquitin chains. MS analysis of LotB and LotC identified different categories of host-interacting proteins and substrates. Together, our results provide new structural insights into bacterial OTU-DUBs and indicate distinct roles in host-pathogen interactions.

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References
1.
Flierman D, van der Heden van Noort G, Ekkebus R, Geurink P, Mevissen T, Hospenthal M . Non-hydrolyzable Diubiquitin Probes Reveal Linkage-Specific Reactivity of Deubiquitylating Enzymes Mediated by S2 Pockets. Cell Chem Biol. 2016; 23(4):472-82. PMC: 4850247. DOI: 10.1016/j.chembiol.2016.03.009. View

2.
Wang T, Yin L, Cooper E, Lai M, Dickey S, Pickart C . Evidence for bidentate substrate binding as the basis for the K48 linkage specificity of otubain 1. J Mol Biol. 2009; 386(4):1011-23. PMC: 2682458. DOI: 10.1016/j.jmb.2008.12.085. View

3.
Hoover . Canonical dynamics: Equilibrium phase-space distributions. Phys Rev A Gen Phys. 1985; 31(3):1695-1697. DOI: 10.1103/physreva.31.1695. View

4.
Abdul Rehman S, Kristariyanto Y, Choi S, Nkosi P, Weidlich S, Labib K . MINDY-1 Is a Member of an Evolutionarily Conserved and Structurally Distinct New Family of Deubiquitinating Enzymes. Mol Cell. 2016; 63(1):146-55. PMC: 4942677. DOI: 10.1016/j.molcel.2016.05.009. View

5.
Best R, Zhu X, Shim J, Lopes P, Mittal J, Feig M . Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles. J Chem Theory Comput. 2013; 8(9):3257-3273. PMC: 3549273. DOI: 10.1021/ct300400x. View