» Articles » PMID: 32899230

Spatial Metagenomics of Three Geothermal Sites in Pisciarelli Hot Spring Focusing on the Biochemical Resources of the Microbial Consortia

Overview
Journal Molecules
Publisher MDPI
Specialty Biology
Date 2020 Sep 9
PMID 32899230
Citations 9
Authors
Affiliations
Soon will be listed here.
Abstract

Terrestrial hot springs are of great interest to the general public and to scientists alike due to their unique and extreme conditions. These have been sought out by geochemists, astrobiologists, and microbiologists around the globe who are interested in their chemical properties, which provide a strong selective pressure on local microorganisms. Drivers of microbial community composition in these springs include temperature, pH, in-situ chemistry, and biogeography. Microbes in these communities have evolved strategies to thrive in these conditions by converting hot spring chemicals and organic matter into cellular energy. Following our previous metagenomic analysis of Pisciarelli hot springs (Naples, Italy), we report here the comparative metagenomic study of three novel sites, formed in Pisciarelli as result of recent geothermal activity. This study adds comprehensive information about phylogenetic diversity within Pisciarelli hot springs by peeking into possible mechanisms of adaptation to biogeochemical cycles, and high applicative potential of the entire set of genes involved in the carbohydrate metabolism in this environment (CAZome). This site is an excellent model for the study of biodiversity on Earth and biosignature identification, and for the study of the origin and limits of life.

Citing Articles

Bacterial diversity along the geothermal gradients: insights from the high-altitude Himalayan hot spring habitats of Sikkim.

Kumar S, Das S, Jiya N, Sharma A, Saha C, Sharma P Curr Res Microb Sci. 2024; 7:100310.

PMID: 39629478 PMC: 11613191. DOI: 10.1016/j.crmicr.2024.100310.


Extremophiles in a changing world.

Cowan D, Albers S, Antranikian G, Atomi H, Averhoff B, Basen M Extremophiles. 2024; 28(2):26.

PMID: 38683238 PMC: 11058618. DOI: 10.1007/s00792-024-01341-7.


AMWEst, a new thermostable and detergent-tolerant esterase retrieved from the Albian aquifer.

Adjeroud M, Kecha M, Escuder-Rodriguez J, Becerra M, Gonzalez-Siso M Appl Microbiol Biotechnol. 2024; 108(1):114.

PMID: 38204131 PMC: 10781878. DOI: 10.1007/s00253-023-12844-2.


Mining thermophiles for biotechnologically relevant enzymes: evaluating the potential of European and Caucasian hot springs.

Burkhardt C, Baruth L, Neele Meyer-Heydecke , Klippel B, Margaryan A, Paloyan A Extremophiles. 2023; 28(1):5.

PMID: 37991546 PMC: 10665251. DOI: 10.1007/s00792-023-01321-3.


Comparative metagenomics at Solfatara and Pisciarelli hydrothermal systems in Italy reveal that ecological differences across substrates are not ubiquitous.

Ugwuanyi I, Fogel M, Bowden R, Steele A, De Natale G, Troise C Front Microbiol. 2023; 14:1066406.

PMID: 36819055 PMC: 9930910. DOI: 10.3389/fmicb.2023.1066406.


References
1.
Lin H, Liao Y . Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes. Sci Rep. 2016; 6:24175. PMC: 4828714. DOI: 10.1038/srep24175. View

2.
Chan C, Chan K, Tay Y, Chua Y, Goh K . Diversity of thermophiles in a Malaysian hot spring determined using 16S rRNA and shotgun metagenome sequencing. Front Microbiol. 2015; 6:177. PMC: 4350410. DOI: 10.3389/fmicb.2015.00177. View

3.
Jin M, Gai Y, Guo X, Hou Y, Zeng R . Properties and Applications of Extremozymes from Deep-Sea Extremophilic Microorganisms: A Mini Review. Mar Drugs. 2019; 17(12). PMC: 6950199. DOI: 10.3390/md17120656. View

4.
Ferrer M, Golyshina O, Beloqui A, Golyshin P . Mining enzymes from extreme environments. Curr Opin Microbiol. 2007; 10(3):207-14. DOI: 10.1016/j.mib.2007.05.004. View

5.
Centeno M, Goyal A, Prates J, Ferreira L, Gilbert H, Fontes C . Novel modular enzymes encoded by a cellulase gene cluster in Cellvibrio mixtus. FEMS Microbiol Lett. 2006; 265(1):26-34. DOI: 10.1111/j.1574-6968.2006.00464.x. View