A Comparison of Six DNA Bending Models
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Molecular Biology
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The predictions of six DNA bending models were compared with experimental relative mobility data. The study showed that all the models are reasonably accurate in predicting bending in synthetic sequences and in a natural sequence. The least accurate of these models is the Calladine-Dickerson model. The most consistent model is the ApA Wedge, possibly because it distributes the bends into base-roll and base-tilt components.
Novel implications of a strictly monomorphic (GCC) repeat in the human PRKACB gene.
Khamse S, Jafarian Z, Bozorgmehr A, Tavakoli M, Afshar H, Keshavarz M Sci Rep. 2021; 11(1):20629.
PMID: 34667254 PMC: 8526596. DOI: 10.1038/s41598-021-99932-3.
Baron L, Atar S, Zur H, Roopin M, Goz E, Tuller T Sci Rep. 2021; 11(1):10620.
PMID: 34012100 PMC: 8134455. DOI: 10.1038/s41598-021-89918-6.
Bending and curvature calculations in B-DNA.
Goodsell D, DICKERSON R Nucleic Acids Res. 1994; 22(24):5497-503.
PMID: 7816643 PMC: 332108. DOI: 10.1093/nar/22.24.5497.
DNA topology of the ordered chromatin domain 5' to the human c-myc gene.
Kumar S, Leffak M Nucleic Acids Res. 1989; 17(7):2819-33.
PMID: 2717410 PMC: 317659. DOI: 10.1093/nar/17.7.2819.
Replication of plasmids in gram-negative bacteria.
Kues U, Stahl U Microbiol Rev. 1989; 53(4):491-516.
PMID: 2687680 PMC: 372750. DOI: 10.1128/mr.53.4.491-516.1989.