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Molecular Basis of the Function of Transcriptional Enhancers

Overview
Journal Cells
Publisher MDPI
Date 2020 Jul 9
PMID 32635644
Citations 8
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Abstract

Transcriptional enhancers are major genomic elements that control gene activity in eukaryotes. Recent studies provided deeper insight into the temporal and spatial organization of transcription in the nucleus, the role of non-coding RNAs in the process, and the epigenetic control of gene expression. Thus, multiple molecular details of enhancer functioning were revealed. Here, we describe the recent data and models of molecular organization of enhancer-driven transcription.

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References
1.
Cinghu S, Yang P, Kosak J, Conway A, Kumar D, Oldfield A . Intragenic Enhancers Attenuate Host Gene Expression. Mol Cell. 2017; 68(1):104-117.e6. PMC: 5683415. DOI: 10.1016/j.molcel.2017.09.010. View

2.
Kaikkonen M, Spann N, Heinz S, Romanoski C, Allison K, Stender J . Remodeling of the enhancer landscape during macrophage activation is coupled to enhancer transcription. Mol Cell. 2013; 51(3):310-25. PMC: 3779836. DOI: 10.1016/j.molcel.2013.07.010. View

3.
Melo C, Drost J, Wijchers P, van de Werken H, de Wit E, Vrielink J . eRNAs are required for p53-dependent enhancer activity and gene transcription. Mol Cell. 2013; 49(3):524-35. DOI: 10.1016/j.molcel.2012.11.021. View

4.
Shechner D, Hacisuleyman E, Younger S, Rinn J . Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display. Nat Methods. 2015; 12(7):664-70. PMC: 4821475. DOI: 10.1038/nmeth.3433. View

5.
Jeong K, Kim K, Situ A, Ulmer T, An W, Stallcup M . Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation. Nat Struct Mol Biol. 2011; 18(12):1358-65. PMC: 3230772. DOI: 10.1038/nsmb.2153. View