» Articles » PMID: 32531209

Xist Repeats A and B Account for Two Distinct Phases of X Inactivation Establishment

Overview
Journal Dev Cell
Publisher Cell Press
Date 2020 Jun 13
PMID 32531209
Citations 23
Authors
Affiliations
Soon will be listed here.
Abstract

X chromosome inactivation (XCI) is a global silencing mechanism by which XX and XY mammals equalize X-linked gene dosages. XCI begins with an establishment phase during which Xist RNA spreads and induces de novo heterochromatinization across a female X chromosome and is followed by a maintenance phase when multiple epigenetic pathways lock down the inactive X (Xi) state. Involvement of Polycomb repressive complexes 1 and 2 in XCI has been intensively studied but with conflicting conclusions regarding their recruitment and role in Xi silencing. Here, we reveal that establishment of XCI has two phases and reconcile the roles that Xist repeats A and B play in gene silencing and Polycomb recruitment. Repeat A initiates both processes, whereas repeat B bolsters or stabilizes them thereafter. Once established, XCI no longer requires repeat A during maintenance. These findings integrate disparate studies and present a unified view of Xist's role in Polycomb-mediated silencing.

Citing Articles

Deletion of Xist repeat B disrupts cell cycle and asymmetric cell division through Usp9x hyperactivation in mice.

Liang M, Zhang L, Gong H, Yang L, Wang H, Song N Nucleic Acids Res. 2025; 53(5).

PMID: 40042815 PMC: 11880805. DOI: 10.1093/nar/gkaf142.


A biophysical basis for the spreading behavior and limited diffusion of Xist.

Ding M, Wang D, Chen H, Kesner B, Grimm N, Weissbein U Cell. 2025; 188(4):978-997.e25.

PMID: 39824183 PMC: 11863002. DOI: 10.1016/j.cell.2024.12.004.


Multifaceted role of CTCF in X-chromosome inactivation.

Bammidi L, Gayen S Chromosoma. 2024; 133(4):217-231.

PMID: 39433641 DOI: 10.1007/s00412-024-00826-w.


Re-analysis of CLAP data affirms PRC2 as an RNA binding protein.

Lee Y, Das P, Kesner B, Rosenberg M, Blum R, Lee J bioRxiv. 2024; .

PMID: 39345380 PMC: 11429800. DOI: 10.1101/2024.09.19.613009.


Xist RNA binds select autosomal genes and depends on Repeat B to regulate their expression.

Yao S, Jeon Y, Kesner B, Lee J bioRxiv. 2024; .

PMID: 39091753 PMC: 11291044. DOI: 10.1101/2024.07.23.604772.


References
1.
Liao Y, Smyth G, Shi W . featureCounts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics. 2013; 30(7):923-30. DOI: 10.1093/bioinformatics/btt656. View

2.
Schoeftner S, Sengupta A, Kubicek S, Mechtler K, Spahn L, Koseki H . Recruitment of PRC1 function at the initiation of X inactivation independent of PRC2 and silencing. EMBO J. 2006; 25(13):3110-22. PMC: 1500994. DOI: 10.1038/sj.emboj.7601187. View

3.
Minajigi A, Froberg J, Wei C, Sunwoo H, Kesner B, Colognori D . Chromosomes. A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation. Science. 2015; 349(6245). PMC: 4845908. DOI: 10.1126/science.aab2276. View

4.
Kalantry S, Magnuson T . The Polycomb group protein EED is dispensable for the initiation of random X-chromosome inactivation. PLoS Genet. 2006; 2(5):e66. PMC: 1456320. DOI: 10.1371/journal.pgen.0020066. View

5.
Sripathy S, Leko V, Adrianse R, Loe T, Foss E, Dalrymple E . Screen for reactivation of MeCP2 on the inactive X chromosome identifies the BMP/TGF-β superfamily as a regulator of XIST expression. Proc Natl Acad Sci U S A. 2017; 114(7):1619-1624. PMC: 5321041. DOI: 10.1073/pnas.1621356114. View