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A Unified Model for the Function of YTHDF Proteins in Regulating MA-Modified MRNA

Overview
Journal Cell
Publisher Cell Press
Specialty Cell Biology
Date 2020 Jun 4
PMID 32492408
Citations 357
Authors
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Abstract

N-methyladenosine (mA) is the most abundant mRNA nucleotide modification and regulates critical aspects of cellular physiology and differentiation. mA is thought to mediate its effects through a complex network of interactions between different mA sites and three functionally distinct cytoplasmic YTHDF mA-binding proteins (DF1, DF2, and DF3). In contrast to the prevailing model, we show that DF proteins bind the same mA-modified mRNAs rather than different mRNAs. Furthermore, we find that DF proteins do not induce translation in HeLa cells. Instead, the DF paralogs act redundantly to mediate mRNA degradation and cellular differentiation. The ability of DF proteins to regulate stability and differentiation becomes evident only when all three DF paralogs are depleted simultaneously. Our study reveals a unified model of mA function in which all mA-modified mRNAs are subjected to the combined action of YTHDF proteins in proportion to the number of mA sites.

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References
1.
Calviello L, Mukherjee N, Wyler E, Zauber H, Hirsekorn A, Selbach M . Detecting actively translated open reading frames in ribosome profiling data. Nat Methods. 2015; 13(2):165-70. DOI: 10.1038/nmeth.3688. View

2.
Hesser C, Karijolich J, Dominissini D, He C, Glaunsinger B . N6-methyladenosine modification and the YTHDF2 reader protein play cell type specific roles in lytic viral gene expression during Kaposi's sarcoma-associated herpesvirus infection. PLoS Pathog. 2018; 14(4):e1006995. PMC: 5919695. DOI: 10.1371/journal.ppat.1006995. View

3.
Birkaya B, Ortt K, Sinha S . Novel in vivo targets of DeltaNp63 in keratinocytes identified by a modified chromatin immunoprecipitation approach. BMC Mol Biol. 2007; 8:43. PMC: 1890296. DOI: 10.1186/1471-2199-8-43. View

4.
Winkler R, Gillis E, Lasman L, Safra M, Geula S, Soyris C . mA modification controls the innate immune response to infection by targeting type I interferons. Nat Immunol. 2018; 20(2):173-182. DOI: 10.1038/s41590-018-0275-z. View

5.
Zhong S, Li H, Bodi Z, Button J, Vespa L, Herzog M . MTA is an Arabidopsis messenger RNA adenosine methylase and interacts with a homolog of a sex-specific splicing factor. Plant Cell. 2008; 20(5):1278-88. PMC: 2438467. DOI: 10.1105/tpc.108.058883. View