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A Dynamical Paradigm for Molecular Cell Biology

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Specialty Cell Biology
Date 2020 May 5
PMID 32362451
Citations 25
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Abstract

The driving passion of molecular cell biologists is to understand the molecular mechanisms that control important aspects of cell physiology, but this ambition is often limited by the wealth of molecular details currently known about these mechanisms. Their complexity overwhelms our intuitive notions of how molecular regulatory networks might respond under normal and stressful conditions. To make progress we need a new paradigm for connecting molecular biology to cell physiology. We suggest an approach that uses precise mathematical methods to associate the qualitative features of dynamical systems, as conveyed by 'bifurcation diagrams', with 'signal-response' curves measured by cell biologists.

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References
1.
Relogio A, Westermark P, Wallach T, Schellenberg K, Kramer A, Herzel H . Tuning the mammalian circadian clock: robust synergy of two loops. PLoS Comput Biol. 2011; 7(12):e1002309. PMC: 3240597. DOI: 10.1371/journal.pcbi.1002309. View

2.
Kunche S, Yan H, Calof A, Lowengrub J, Lander A . Feedback, Lineages and Self-Organizing Morphogenesis. PLoS Comput Biol. 2016; 12(3):e1004814. PMC: 4798729. DOI: 10.1371/journal.pcbi.1004814. View

3.
Yao G, Lee T, Mori S, Nevins J, You L . A bistable Rb-E2F switch underlies the restriction point. Nat Cell Biol. 2008; 10(4):476-82. DOI: 10.1038/ncb1711. View

4.
Tian X, Zhang H, Zhang J, Xing J . Reciprocal regulation between mRNA and microRNA enables a bistable switch that directs cell fate decisions. FEBS Lett. 2016; 590(19):3443-3455. DOI: 10.1002/1873-3468.12379. View

5.
Novak B, Tyson J . Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos. J Cell Sci. 1993; 106 ( Pt 4):1153-68. DOI: 10.1242/jcs.106.4.1153. View