» Articles » PMID: 18662776

The Stochastic Nature of Biochemical Networks

Overview
Publisher Elsevier
Specialty Biotechnology
Date 2008 Jul 30
PMID 18662776
Citations 71
Authors
Affiliations
Soon will be listed here.
Abstract

Cell behaviour and the cellular environment are stochastic. Phenotypes vary across isogenic populations and in individual cells over time. Here we will argue that to understand the abilities of cells we need to understand their stochastic nature. New experimental techniques allow gene expression to be followed in single cells over time and reveal stochastic bursts of both mRNA and protein synthesis in many different types of organisms. Stochasticity has been shown to be exploited by bacteria and viruses to decide between different behaviours. In fluctuating environments, cells that respond stochastically can out-compete those that sense environmental changes, and stochasticity may even have contributed to chromosomal gene order. We will focus on advances in modelling stochasticity, in understanding its effects on evolution and cellular design, and on means by which it may be exploited in biotechnology and medicine.

Citing Articles

Inference of a three-gene network underpinning epidermal stem cell development in .

Brozek A, Ceccarelli A, Solvsten Jorgensen A, Hintze M, Shahrezaei V, Barkoulas M iScience. 2025; 28(2):111826.

PMID: 39995855 PMC: 11848479. DOI: 10.1016/j.isci.2025.111826.


Unveiling inter-embryo variability in spindle length over time: Towards quantitative phenotype analysis.

Le Cunff Y, Chesneau L, Pastezeur S, Pinson X, Soler N, Fairbrass D PLoS Comput Biol. 2024; 20(9):e1012330.

PMID: 39236069 PMC: 11376571. DOI: 10.1371/journal.pcbi.1012330.


Learning interpretable dynamics of stochastic complex systems from experimental data.

Gao T, Barzel B, Yan G Nat Commun. 2024; 15(1):6029.

PMID: 39019850 PMC: 11254936. DOI: 10.1038/s41467-024-50378-x.


Futile lipid cycling: from biochemistry to physiology.

Sharma A, Khandelwal R, Wolfrum C Nat Metab. 2024; 6(5):808-824.

PMID: 38459186 DOI: 10.1038/s42255-024-01003-0.


Coupling allows robust mammalian redox circadian rhythms despite heterogeneity and noise.

Del Olmo M, Kalashnikov A, Schmal C, Kramer A, Herzel H Heliyon. 2024; 10(2):e24773.

PMID: 38312577 PMC: 10835301. DOI: 10.1016/j.heliyon.2024.e24773.