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An Expanded Landscape of Human Long Noncoding RNA

Overview
Specialty Biochemistry
Date 2019 Jul 28
PMID 31350901
Citations 67
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Abstract

Long noncoding RNAs (lncRNAs) are emerging as key regulators of multiple essential biological processes involved in physiology and pathology. By analyzing the largest compendium of 14,166 samples from normal and tumor tissues, we significantly expand the landscape of human long noncoding RNA with a high-quality atlas: RefLnc (Reference catalog of LncRNA). Powered by comprehensive annotation across multiple sources, RefLnc helps to pinpoint 275 novel intergenic lncRNAs correlated with sex, age or race as well as 369 novel ones associated with patient survival, clinical stage, tumor metastasis or recurrence. Integrated in a user-friendly online portal, the expanded catalog of human lncRNAs provides a valuable resource for investigating lncRNA function in both human biology and cancer development.

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References
1.
Li S, Labaj P, Zumbo P, Sykacek P, Shi W, Shi L . Detecting and correcting systematic variation in large-scale RNA sequencing data. Nat Biotechnol. 2014; 32(9):888-95. PMC: 4160374. DOI: 10.1038/nbt.3000. View

2.
Quinn J, Chang H . Unique features of long non-coding RNA biogenesis and function. Nat Rev Genet. 2015; 17(1):47-62. DOI: 10.1038/nrg.2015.10. View

3.
Pruitt K, Brown G, Hiatt S, Thibaud-Nissen F, Astashyn A, Ermolaeva O . RefSeq: an update on mammalian reference sequences. Nucleic Acids Res. 2013; 42(Database issue):D756-63. PMC: 3965018. DOI: 10.1093/nar/gkt1114. View

4.
Bao Z, Chen H, Yang M, Zhang C, Yu K, Ye W . RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas. Genome Res. 2014; 24(11):1765-73. PMC: 4216918. DOI: 10.1101/gr.165126.113. View

5.
Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H . The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression. Genome Res. 2012; 22(9):1775-89. PMC: 3431493. DOI: 10.1101/gr.132159.111. View