de Souza Rodrigues J, Basinger N, Leon R, Bacha A, da Silva Santos R, Eason K
Plant Environ Interact. 2024; 5(6):e70023.
PMID: 39703194
PMC: 11655308.
DOI: 10.1002/pei3.70023.
Batty J, Smith L, Hall M
BMJ Med. 2024; 3(1):e001114.
PMID: 39574423
PMC: 11580320.
DOI: 10.1136/bmjmed-2024-001114.
Qin Z, Ren H, Zhao P, Wang K, Liu H, Miao C
Brief Bioinform. 2024; 25(6).
PMID: 39316944
PMC: 11421846.
DOI: 10.1093/bib/bbae469.
Pakkir Shah A, Walter A, Ottosson F, Russo F, Navarro-Diaz M, Boldt J
Nat Protoc. 2024; 20(1):92-162.
PMID: 39304763
DOI: 10.1038/s41596-024-01046-3.
Bonnici V, Chicco D
BioData Min. 2024; 17(1):28.
PMID: 39227987
PMC: 11370085.
DOI: 10.1186/s13040-024-00380-2.
The effect of data transformation on low-dimensional integration of single-cell RNA-seq.
Park Y, Hauschild A
BMC Bioinformatics. 2024; 25(1):171.
PMID: 38689234
PMC: 11059821.
DOI: 10.1186/s12859-024-05788-5.
Improving accuracy of vascular access quality classification in hemodialysis patients using deep learning with K highest score feature selection.
Julkaew S, Wongsirichot T, Damkliang K, Sangthawan P
J Int Med Res. 2024; 52(4):3000605241232519.
PMID: 38573764
PMC: 10996358.
DOI: 10.1177/03000605241232519.
Genotype prediction of 336,463 samples from public expression data.
Razi A, Lo C, Wang S, Leek J, Hansen K
bioRxiv. 2024; .
PMID: 38559266
PMC: 10979922.
DOI: 10.1101/2023.10.21.562237.
Governing principles of transcriptional logic out of equilibrium.
Dixit S, Middelkoop T, Choubey S
Biophys J. 2024; 123(8):1015-1029.
PMID: 38486450
PMC: 11052701.
DOI: 10.1016/j.bpj.2024.03.020.
Incipient functional SARS-CoV-2 diversification identified through neural network haplotype maps.
Delgado S, Somovilla P, Ferrer-Orta C, Martinez-Gonzalez B, Vazquez-Monteagudo S, Munoz-Flores J
Proc Natl Acad Sci U S A. 2024; 121(10):e2317851121.
PMID: 38416684
PMC: 10927536.
DOI: 10.1073/pnas.2317851121.
MarkerMap: nonlinear marker selection for single-cell studies.
Gregory W, Sarwar N, Kevrekidis G, Villar S, Dumitrascu B
NPJ Syst Biol Appl. 2024; 10(1):17.
PMID: 38351188
PMC: 10864304.
DOI: 10.1038/s41540-024-00339-3.
PaCMAP-embedded convolutional neural network for multi-omics data integration.
Qattous H, Azzeh M, Ibrahim R, Abed Al-Ghafer I, Al Sorkhy M, Alkhateeb A
Heliyon. 2024; 10(1):e23195.
PMID: 38163104
PMC: 10756978.
DOI: 10.1016/j.heliyon.2023.e23195.
Detection of Amyotrophic Lateral Sclerosis (ALS) Comorbidity Trajectories Based on Principal Tree Model Analytics.
Wu Y, Taniar D, Adhinugraha K, Tsai L, Pai T
Biomedicines. 2023; 11(10).
PMID: 37893003
PMC: 10604752.
DOI: 10.3390/biomedicines11102629.
stVAE deconvolves cell-type composition in large-scale cellular resolution spatial transcriptomics.
Li C, Chan T, Yang C, Lin Z
Bioinformatics. 2023; 39(10).
PMID: 37862237
PMC: 10612402.
DOI: 10.1093/bioinformatics/btad642.
Seasonality of acute kidney injury phenotypes in England: an unsupervised machine learning classification study of electronic health records.
Bolt H, Suffel A, Matthewman J, Sandmann F, Tomlinson L, Eggo R
BMC Nephrol. 2023; 24(1):234.
PMID: 37558976
PMC: 10413486.
DOI: 10.1186/s12882-023-03269-0.
Mapping diversity in African trypanosomes using high resolution spatial proteomics.
Moloney N, Barylyuk K, Tromer E, Crook O, Breckels L, Lilley K
Nat Commun. 2023; 14(1):4401.
PMID: 37479728
PMC: 10361982.
DOI: 10.1038/s41467-023-40125-z.
A Guide to Genome-Wide Association Study Design for Diabetic Retinopathy.
Gurung R, Burdon K, McComish B
Methods Mol Biol. 2023; 2678:49-89.
PMID: 37326705
DOI: 10.1007/978-1-0716-3255-0_5.
Multiple Correspondence Analysis and HLA-Associations of Organ Involvement in a Large Cohort of African-American and European-American Patients with Sarcoidosis.
Rasmussen A, Dawkins B, Li C, Pezant N, Levin A, Rybicki B
Lung. 2023; 201(3):297-302.
PMID: 37322162
PMC: 10284928.
DOI: 10.1007/s00408-023-00626-6.
Machine learning in rare disease.
Banerjee J, Taroni J, Allaway R, Prasad D, Guinney J, Greene C
Nat Methods. 2023; 20(6):803-814.
PMID: 37248386
DOI: 10.1038/s41592-023-01886-z.
Stratification of responses to tDCS intervention in a healthy pediatric population based on resting-state EEG profiles.
Dagnino P, Braboszcz C, Kroupi E, Splittgerber M, Brauer H, Dempfle A
Sci Rep. 2023; 13(1):8438.
PMID: 37231030
PMC: 10213038.
DOI: 10.1038/s41598-023-34724-5.