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Consideration of Binding Kinetics in the Design of Stapled Peptide Mimics of the Disordered Proteins Eukaryotic Translation Initiation Factor 4E-Binding Protein 1 and Eukaryotic Translation Initiation Factor 4G

Overview
Journal J Med Chem
Specialty Chemistry
Date 2019 Apr 30
PMID 31033289
Citations 11
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Abstract

Protein disorder plays a crucial role in signal transduction and is key for many cellular processes including transcription, translation, and cell cycle. Within the intrinsically disordered protein interactome, the α-helix is commonly used for binding, which is induced via a disorder-to-order transition. Because the targeting of protein-protein interactions (PPIs) remains an important challenge in medicinal chemistry, efforts have been made to mimic this secondary structure for rational inhibitor design through the use of stapled peptides. Cap-dependent mRNA translation is regulated by two disordered proteins, 4E-BP1 and eIF4G, that inhibit or stimulate the activity of the mG cap-binding translation initiation factor, eIF4E, respectively. Both use an α-helical motif for eIF4E binding, warranting the investigation of stapled peptide mimics for manipulating eIF4E PPIs. Herein, we describe our efforts toward this goal, resulting in the synthesis of a cell-active stapled peptide for further development in manipulating aberrant cap-dependent translation in human diseases.

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References
1.
Marcotrigiano J, Gingras A, Sonenberg N, Burley S . Cap-dependent translation initiation in eukaryotes is regulated by a molecular mimic of eIF4G. Mol Cell. 1999; 3(6):707-16. DOI: 10.1016/s1097-2765(01)80003-4. View

2.
Shoemaker B, Portman J, Wolynes P . Speeding molecular recognition by using the folding funnel: the fly-casting mechanism. Proc Natl Acad Sci U S A. 2000; 97(16):8868-73. PMC: 16787. DOI: 10.1073/pnas.160259697. View

3.
Marcotrigiano J, Lomakin I, Sonenberg N, Pestova T, Hellen C, Burley S . A conserved HEAT domain within eIF4G directs assembly of the translation initiation machinery. Mol Cell. 2001; 7(1):193-203. DOI: 10.1016/s1097-2765(01)00167-8. View

4.
Bienkiewicz E, Adkins J, Lumb K . Functional consequences of preorganized helical structure in the intrinsically disordered cell-cycle inhibitor p27(Kip1). Biochemistry. 2002; 41(3):752-9. DOI: 10.1021/bi015763t. View

5.
Noh W, Mondesire W, Peng J, Jian W, Zhang H, Dong J . Determinants of rapamycin sensitivity in breast cancer cells. Clin Cancer Res. 2004; 10(3):1013-23. DOI: 10.1158/1078-0432.ccr-03-0043. View