6.
Ley R, Lozupone C, Hamady M, Knight R, Gordon J
. Worlds within worlds: evolution of the vertebrate gut microbiota. Nat Rev Microbiol. 2008; 6(10):776-88.
PMC: 2664199.
DOI: 10.1038/nrmicro1978.
View
7.
Van Immerseel F, Ducatelle R, De Vos M, Boon N, Van de Wiele T, Verbeke K
. Butyric acid-producing anaerobic bacteria as a novel probiotic treatment approach for inflammatory bowel disease. J Med Microbiol. 2009; 59(Pt 2):141-143.
DOI: 10.1099/jmm.0.017541-0.
View
8.
Caporaso J, Kuczynski J, Stombaugh J, Bittinger K, Bushman F, Costello E
. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010; 7(5):335-6.
PMC: 3156573.
DOI: 10.1038/nmeth.f.303.
View
9.
Hougen H
. The athymic nude rat. Immunobiological characteristics with special reference to establishment of non-antigen-specific T-cell reactivity and induction of antigen-specific immunity. APMIS Suppl. 1991; 21:1-39.
View
10.
Lozupone C, Lladser M, Knights D, Stombaugh J, Knight R
. UniFrac: an effective distance metric for microbial community comparison. ISME J. 2010; 5(2):169-72.
PMC: 3105689.
DOI: 10.1038/ismej.2010.133.
View
11.
Chua W, Hansen T
. Immunology: Vitamins prime immunity. Nature. 2012; 491(7426):680-1.
DOI: 10.1038/491680a.
View
12.
Langille M, Zaneveld J, Caporaso J, McDonald D, Knights D, Reyes J
. Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol. 2013; 31(9):814-21.
PMC: 3819121.
DOI: 10.1038/nbt.2676.
View
13.
McHardy I, Goudarzi M, Tong M, Ruegger P, Schwager E, Weger J
. Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships. Microbiome. 2014; 1(1):17.
PMC: 3971612.
DOI: 10.1186/2049-2618-1-17.
View
14.
McMurdie P, Holmes S
. Waste not, want not: why rarefying microbiome data is inadmissible. PLoS Comput Biol. 2014; 10(4):e1003531.
PMC: 3974642.
DOI: 10.1371/journal.pcbi.1003531.
View
15.
Carmody R, Turnbaugh P
. Host-microbial interactions in the metabolism of therapeutic and diet-derived xenobiotics. J Clin Invest. 2014; 124(10):4173-81.
PMC: 4191041.
DOI: 10.1172/JCI72335.
View
16.
Backhed F, Roswall J, Peng Y, Feng Q, Jia H, Kovatcheva-Datchary P
. Dynamics and Stabilization of the Human Gut Microbiome during the First Year of Life. Cell Host Microbe. 2015; 17(5):690-703.
DOI: 10.1016/j.chom.2015.04.004.
View
17.
Lau J, Whelan F, Herath I, Lee C, Collins S, Bercik P
. Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling. Genome Med. 2016; 8(1):72.
PMC: 4929786.
DOI: 10.1186/s13073-016-0327-7.
View
18.
Shatzkes K, Tang C, Singleton E, Shukla S, Zuena M, Gupta S
. Effect of predatory bacteria on the gut bacterial microbiota in rats. Sci Rep. 2017; 7:43483.
PMC: 5337950.
DOI: 10.1038/srep43483.
View
19.
Pan W, Kang Y
. Gut microbiota and chronic kidney disease: implications for novel mechanistic insights and therapeutic strategies. Int Urol Nephrol. 2017; 50(2):289-299.
DOI: 10.1007/s11255-017-1689-5.
View
20.
Milani C, Duranti S, Bottacini F, Casey E, Turroni F, Mahony J
. The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota. Microbiol Mol Biol Rev. 2017; 81(4).
PMC: 5706746.
DOI: 10.1128/MMBR.00036-17.
View