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Genome Sequences of a Novel Strain of Big Cypress Orbivirus Isolated from a Dead Florida White-Tailed Deer (Odocoileus Virginianus)

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Specialty Microbiology
Date 2019 Apr 3
PMID 30938331
Citations 4
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Abstract

Here, we report the coding sequences of Big Cypress orbivirus isolated from a dead white-tailed deer () from Florida in 2017. To our knowledge, this is the first detection of Big Cypress orbivirus in a vertebrate host.

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References
1.
Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F . Tablet--next generation sequence assembly visualization. Bioinformatics. 2009; 26(3):401-2. PMC: 2815658. DOI: 10.1093/bioinformatics/btp666. View

2.
Langmead B, Salzberg S . Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012; 9(4):357-9. PMC: 3322381. DOI: 10.1038/nmeth.1923. View

3.
Bankevich A, Nurk S, Antipov D, Gurevich A, Dvorkin M, Kulikov A . SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol. 2012; 19(5):455-77. PMC: 3342519. DOI: 10.1089/cmb.2012.0021. View

4.
Wood D, Salzberg S . Kraken: ultrafast metagenomic sequence classification using exact alignments. Genome Biol. 2014; 15(3):R46. PMC: 4053813. DOI: 10.1186/gb-2014-15-3-r46. View

5.
Nguyen L, Schmidt H, von Haeseler A, Minh B . IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol Biol Evol. 2014; 32(1):268-74. PMC: 4271533. DOI: 10.1093/molbev/msu300. View