Toward an Efficient Workflow for the Analysis of the Human Milk Peptidome
Overview
Affiliations
There is a growing interest for investigating endogenous peptides from human biofluids which may provide yet unknown functional benefits or provide an early indication of disease states as potential biomarkers. A major technical bottleneck in the investigation of endogenous peptides from body fluids, e.g., serum, urine, saliva, and milk, is that each of these fluids seems to require unique workflows for peptide extraction and analysis. Thus, protocols optimized for serum cannot be directly translated to milk. One biofluid that is readily available, but which has not been extensively explored, is human milk, whose analysis could contribute to our understanding of the immune development of the newborn infant. Due to the occurrence of highly abundant lipids, proteins, and saccharides, milk peptidomics requires dedicated sample preparation steps. The aim of this study was to develop a time and cost-efficient workflow for the analysis of the human milk peptidome, for which we compared peptide extraction methodologies and peptide fragmentation methods. A method using strong acid protein precipitation and analysis by collision-induced dissociation fragmentation was found to be superior to all other test methods, allowing us qualitative and quantitative detection of about 4000 endogenous human milk peptides in a total analysis time of just 18 h.
Optimizing workflow efficiency for analyzing low molecular weight endogenous peptides in colostrum.
Panchal P, Rani R, Kumar R, Malik S, Mukesh M, Kaushik J RSC Adv. 2024; 14(40):29189-29200.
PMID: 39285878 PMC: 11403347. DOI: 10.1039/d4ra03199g.
Zhang J, Lin D, Wu Y, Chen L, Ma Z, Wu M Front Pharmacol. 2024; 15:1366407.
PMID: 38904003 PMC: 11188354. DOI: 10.3389/fphar.2024.1366407.
Network analysis of the proteome and peptidome sheds light on human milk as a biological system.
Dekker P, Boeren S, Saccenti E, Hettinga K Sci Rep. 2024; 14(1):7569.
PMID: 38555284 PMC: 10981717. DOI: 10.1038/s41598-024-58127-2.
Isolation and characterization of antioxidant peptides from () protein enzymatic hydrolysates.
Huang H, Cen J, Yang D, Li L, Li C, Yang X Food Sci Nutr. 2023; 11(1):261-273.
PMID: 36655069 PMC: 9834847. DOI: 10.1002/fsn3.3058.
Dekker P, Boeren S, van Goudoever J, Vervoort J, Hettinga K J Proteome Res. 2022; 21(4):1002-1016.
PMID: 35104145 PMC: 8981310. DOI: 10.1021/acs.jproteome.1c00879.