The Taxonomy of an Australian Nodavirus Isolated from Mosquitoes

Overview

Journal PLoS One

Specialties General Medicine
Science

Date 2019 Jan 1

PMID 30596795

Citations 9

Authors

David Warrilow

Bixing Huang

Natalee D Newton

Jessica J Harrison

Karyn N Johnson

Weng Kong Chow

Roy A Hall

Jody Hobson-Peters

Affiliations

Soon will be listed here.

Abstract

We describe a virus isolated from Culex annulirostris mosquitoes in Australia. Phylogenetic analysis of its RNA-dependent RNA polymerase sequence and that of other related viruses revealed 6 clades, two of which corresponded wholly or partly with existing genera in the family Nodaviridae. There was greater genetic diversity within the family than previously recognized prompting us to suggest that additional genera should be considered within the family.

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References

Frances S, Cooper R, Rowcliffe K, Chen N, Cheng Q . Occurrence of Ross River virus and Barmah Forest virus in mosquitoes at Shoalwater Bay military training area, Queensland, Australia. J Med Entomol. 2004; 41(1):115-20. DOI: 10.1603/0022-2585-41.1.115. View

Castorena K, Weeks S, Stapleford K, Cadwallader A, Miller D . A functional heat shock protein 90 chaperone is essential for efficient flock house virus RNA polymerase synthesis in Drosophila cells. J Virol. 2007; 81(16):8412-20. PMC: 1951356. DOI: 10.1128/JVI.00189-07. View

Ward C . Progress towards a higher taxonomy of viruses. Res Virol. 1993; 144(6):419-53. PMC: 7135741. DOI: 10.1016/s0923-2516(06)80059-2. View

Venter P, Schneemann A . Recent insights into the biology and biomedical applications of Flock House virus. Cell Mol Life Sci. 2008; 65(17):2675-87. PMC: 2536769. DOI: 10.1007/s00018-008-8037-y. View

Conceicao-Neto N, Zeller M, Heylen E, Lefrere H, Mesquita J, Matthijnssens J . Fecal virome analysis of three carnivores reveals a novel nodavirus and multiple gemycircularviruses. Virol J. 2015; 12:79. PMC: 4459443. DOI: 10.1186/s12985-015-0305-5. View

Johnson K, Zeddam J, Ball L . Characterization and construction of functional cDNA clones of Pariacoto virus, the first Alphanodavirus isolated outside Australasia. J Virol. 2000; 74(11):5123-32. PMC: 110865. DOI: 10.1128/jvi.74.11.5123-5132.2000. View

Huang B, Pyke A, McMahon J, Warrilow D . Complete Coding Sequence of a Case of Chikungunya Virus Imported into Australia. Genome Announc. 2017; 5(19). PMC: 5427210. DOI: 10.1128/genomeA.00310-17. View

Bai H, Wang Y, Li X, Mao H, Li Y, Han S . Isolation and characterization of a novel alphanodavirus. Virol J. 2011; 8:311. PMC: 3141682. DOI: 10.1186/1743-422X-8-311. View

Miller D, Ahlquist P . Flock house virus RNA polymerase is a transmembrane protein with amino-terminal sequences sufficient for mitochondrial localization and membrane insertion. J Virol. 2002; 76(19):9856-67. PMC: 136485. DOI: 10.1128/jvi.76.19.9856-9867.2002. View

10.

Li L, Victoria J, Wang C, Jones M, Fellers G, Kunz T . Bat guano virome: predominance of dietary viruses from insects and plants plus novel mammalian viruses. J Virol. 2010; 84(14):6955-65. PMC: 2898246. DOI: 10.1128/JVI.00501-10. View

11.

Van Wynsberghe P, Chen H, Ahlquist P . Nodavirus RNA replication protein a induces membrane association of genomic RNA. J Virol. 2007; 81(9):4633-44. PMC: 1900146. DOI: 10.1128/JVI.02267-06. View

12.

Simmonds P . Methods for virus classification and the challenge of incorporating metagenomic sequence data. J Gen Virol. 2015; 96(Pt 6):1193-1206. DOI: 10.1099/jgv.0.000016. View

13.

Koonin E . The phylogeny of RNA-dependent RNA polymerases of positive-strand RNA viruses. J Gen Virol. 1991; 72 ( Pt 9):2197-206. DOI: 10.1099/0022-1317-72-9-2197. View

14.

Conceicao-Neto N, Godinho R, Alvares F, Yinda C, Deboutte W, Zeller M . Viral gut metagenomics of sympatric wild and domestic canids, and monitoring of viruses: Insights from an endangered wolf population. Ecol Evol. 2017; 7(12):4135-4146. PMC: 5478050. DOI: 10.1002/ece3.2991. View

15.

Odegard A, Banerjee M, Johnson J . Flock house virus: a model system for understanding non-enveloped virus entry and membrane penetration. Curr Top Microbiol Immunol. 2010; 343:1-22. DOI: 10.1007/82_2010_35. View

16.

Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S . Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics. 2012; 28(12):1647-9. PMC: 3371832. DOI: 10.1093/bioinformatics/bts199. View

17.

SCHERER W, HURLBUT H . Nodamura virus from Japan: a new and unusual arbovirus resistant to diethyl ether and chloroform. Am J Epidemiol. 1967; 86(2):271-85. DOI: 10.1093/oxfordjournals.aje.a120737. View

18.

Sahul Hameed A, Ninawe A, Nakai T, Chi S, Johnson K, Ictv Report Consortium . ICTV Virus Taxonomy Profile: Nodaviridae. J Gen Virol. 2018; 100(1):3-4. DOI: 10.1099/jgv.0.001170. View

19.

Schuster S, Zirkel F, Kurth A, van Cleef K, Drosten C, van Rij R . A unique nodavirus with novel features: mosinovirus expresses two subgenomic RNAs, a capsid gene of unknown origin, and a suppressor of the antiviral RNA interference pathway. J Virol. 2014; 88(22):13447-59. PMC: 4249075. DOI: 10.1128/JVI.02144-14. View

20.

Franz C, Zhao G, Felix M, Wang D . Complete genome sequence of Le Blanc virus, a third Caenorhabditis nematode-infecting virus. J Virol. 2012; 86(21):11940. PMC: 3486331. DOI: 10.1128/JVI.02025-12. View