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Targeting CDK9 Reactivates Epigenetically Silenced Genes in Cancer

Abstract

Cyclin-dependent kinase 9 (CDK9) promotes transcriptional elongation through RNAPII pause release. We now report that CDK9 is also essential for maintaining gene silencing at heterochromatic loci. Through a live cell drug screen with genetic confirmation, we discovered that CDK9 inhibition reactivates epigenetically silenced genes in cancer, leading to restored tumor suppressor gene expression, cell differentiation, and activation of endogenous retrovirus genes. CDK9 inhibition dephosphorylates the SWI/SNF protein BRG1, which contributes to gene reactivation. By optimization through gene expression, we developed a highly selective CDK9 inhibitor (MC180295, IC50 = 5 nM) that has broad anti-cancer activity in vitro and is effective in in vivo cancer models. Additionally, CDK9 inhibition sensitizes to the immune checkpoint inhibitor α-PD-1 in vivo, making it an excellent target for epigenetic therapy of cancer.

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References
1.
Hawkins P, Nicholls A . Conformer generation with OMEGA: learning from the data set and the analysis of failures. J Chem Inf Model. 2012; 52(11):2919-36. DOI: 10.1021/ci300314k. View

2.
Yuan Z, Lin S, Molden R, Cao X, Bhanu N, Wang X . EpiProfile Quantifies Histone Peptides With Modifications by Extracting Retention Time and Intensity in High-resolution Mass Spectra. Mol Cell Proteomics. 2015; 14(6):1696-707. PMC: 4458730. DOI: 10.1074/mcp.M114.046011. View

3.
Asghar U, Witkiewicz A, Turner N, Knudsen E . The history and future of targeting cyclin-dependent kinases in cancer therapy. Nat Rev Drug Discov. 2015; 14(2):130-46. PMC: 4480421. DOI: 10.1038/nrd4504. View

4.
Rouillard A, Gundersen G, Fernandez N, Wang Z, Monteiro C, McDermott M . The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. Database (Oxford). 2016; 2016. PMC: 4930834. DOI: 10.1093/database/baw100. View

5.
Garriga J, Grana X . Cellular control of gene expression by T-type cyclin/CDK9 complexes. Gene. 2004; 337:15-23. DOI: 10.1016/j.gene.2004.05.007. View