» Articles » PMID: 26317466

Inhibiting DNA Methylation Causes an Interferon Response in Cancer Via DsRNA Including Endogenous Retroviruses

Abstract

We show that DNA methyltransferase inhibitors (DNMTis) upregulate immune signaling in cancer through the viral defense pathway. In ovarian cancer (OC), DNMTis trigger cytosolic sensing of double-stranded RNA (dsRNA) causing a type I interferon response and apoptosis. Knocking down dsRNA sensors TLR3 and MAVS reduces this response 2-fold and blocking interferon beta or its receptor abrogates it. Upregulation of hypermethylated endogenous retrovirus (ERV) genes accompanies the response and ERV overexpression activates the response. Basal levels of ERV and viral defense gene expression significantly correlate in primary OC and the latter signature separates primary samples for multiple tumor types from The Cancer Genome Atlas into low versus high expression groups. In melanoma patients treated with an immune checkpoint therapy, high viral defense signature expression in tumors significantly associates with durable clinical response and DNMTi treatment sensitizes to anti-CTLA4 therapy in a pre-clinical melanoma model.

Citing Articles

The Emerging Role of CD8 T Cells in Shaping Treatment Outcomes of Patients with MDS and AML.

Tasis A, Spyropoulos T, Mitroulis I Cancers (Basel). 2025; 17(5).

PMID: 40075597 PMC: 11898900. DOI: 10.3390/cancers17050749.


Identification and clinical implications of endogenous retrovirus elements suppressed by SETDB1 in hepatocellular carcinoma.

Igarashi Y, Akiyama Y, Shimada S, Watanabe S, Hatano M, Kodera K JHEP Rep. 2025; 7(3):101307.

PMID: 40059971 PMC: 11889587. DOI: 10.1016/j.jhepr.2024.101307.


Reducing batch effects in single cell chromatin accessibility measurements by pooled transposition with MULTI-ATAC.

Conrad D, Phong K, Korotkevich E, McGinnis C, Zhu Q, Chow E bioRxiv. 2025; .

PMID: 40027737 PMC: 11870453. DOI: 10.1101/2025.02.14.638353.


Pan-cancer multi-omic model of LINE-1 activity reveals locus heterogeneity of retrotransposition efficiency.

Solovyov A, Behr J, Hoyos D, Banks E, Drong A, Thornlow B Nat Commun. 2025; 16(1):2049.

PMID: 40021663 PMC: 11871128. DOI: 10.1038/s41467-025-57271-1.


Genome-wide profiling of N6-methyladenosine-modified pseudogene-derived long noncoding RNAs reveals the tumour-promoting and innate immune-restraining function of RPS15AP12 in ovarian cancer.

Xu J, Ren Y, Lu J, Qin F, Yang D, Tang C Clin Transl Med. 2025; 15(3):e70249.

PMID: 40000433 PMC: 11859666. DOI: 10.1002/ctm2.70249.


References
1.
Brahmer J, Tykodi S, Chow L, Hwu W, Topalian S, Hwu P . Safety and activity of anti-PD-L1 antibody in patients with advanced cancer. N Engl J Med. 2012; 366(26):2455-65. PMC: 3563263. DOI: 10.1056/NEJMoa1200694. View

2.
Su W, Li J, Cui Y, Hong J, Du W, Wang Y . Bidirectional regulation between WDR83 and its natural antisense transcript DHPS in gastric cancer. Cell Res. 2012; 22(9):1374-89. PMC: 3434345. DOI: 10.1038/cr.2012.57. View

3.
Strissel P, Ruebner M, Thiel F, Wachter D, Ekici A, Wolf F . Reactivation of codogenic endogenous retroviral (ERV) envelope genes in human endometrial carcinoma and prestages: Emergence of new molecular targets. Oncotarget. 2012; 3(10):1204-19. PMC: 3717959. DOI: 10.18632/oncotarget.679. View

4.
Leonova K, Brodsky L, Lipchick B, Pal M, Novototskaya L, Chenchik A . p53 cooperates with DNA methylation and a suicidal interferon response to maintain epigenetic silencing of repeats and noncoding RNAs. Proc Natl Acad Sci U S A. 2012; 110(1):E89-98. PMC: 3538199. DOI: 10.1073/pnas.1216922110. View

5.
Santoni F, Guerra J, Luban J . HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency. Retrovirology. 2012; 9:111. PMC: 3558390. DOI: 10.1186/1742-4690-9-111. View