Local Tandem Repeat Expansion in RNA As a Model for the Functionalisation of NcRNA
Overview
Authors
Affiliations
, the master regulator of the X chromosome inactivation in mammals, is a 17 kb lncRNA that acts to silence the majority of genes along the chromosome from which it is transcribed. The two key processes required for RNA function, localisation and recruitment of silencing factors, are genetically separable, at least in part. Recent studies have identified RNA sequences and associated RNA-binding proteins (RBPs) that are important for these processes. Notably, several of the key RNA elements correspond to local tandem repeats. In this review, I use examples to illustrate different modes whereby tandem repeat amplification has been exploited to allow orthodox RBPs to confer new functions for -mediated chromosome inactivation. I further discuss the potential generality of tandem repeat expansion in the evolution of functional long non-coding RNAs (lncRNAs).
RNA: The Unsuspected Conductor in the Orchestra of Macromolecular Crowding.
Zacco E, Broglia L, Kurihara M, Monti M, Gustincich S, Pastore A Chem Rev. 2024; 124(8):4734-4777.
PMID: 38579177 PMC: 11046439. DOI: 10.1021/acs.chemrev.3c00575.
Liang M, Zhang L, Lai L, Li Z Cell Mol Life Sci. 2024; 81(1):156.
PMID: 38551746 PMC: 10980640. DOI: 10.1007/s00018-024-05151-0.
CIZ1 in Xist seeded assemblies at the inactive X chromosome.
Sofi S, Coverley D Front Cell Dev Biol. 2023; 11:1296600.
PMID: 38155839 PMC: 10753822. DOI: 10.3389/fcell.2023.1296600.
Long non-coding RNAs: definitions, functions, challenges and recommendations.
Mattick J, Amaral P, Carninci P, Carpenter S, Chang H, Chen L Nat Rev Mol Cell Biol. 2023; 24(6):430-447.
PMID: 36596869 PMC: 10213152. DOI: 10.1038/s41580-022-00566-8.
Long noncoding RNA and protein abundance in lncRNPs.
Wu M, Yang L, Chen L RNA. 2021; 27(12):1427-1440.
PMID: 34526358 PMC: 8594465. DOI: 10.1261/rna.078971.121.