» Articles » PMID: 30214028

Soil Exchange Rates of COS and COO Differ with the Diversity of Microbial Communities and Their Carbonic Anhydrase Enzymes

Abstract

Differentiating the contributions of photosynthesis and respiration to the global carbon cycle is critical for improving predictive climate models. Carbonic anhydrase (CA) activity in leaves is responsible for the largest biosphere-atmosphere trace gas fluxes of carbonyl sulfide (COS) and the oxygen-18 isotopologue of carbon dioxide (COO) that both reflect gross photosynthetic rates. However, CA activity also occurs in soils and will be a source of uncertainty in the use of COS and COO as carbon cycle tracers until process-based constraints are improved. In this study, we measured COS and COO exchange rates and estimated the corresponding CA activity in soils from a range of biomes and land use types. Soil CA activity was not uniform for COS and CO, and patterns of divergence were related to microbial community composition and CA gene expression patterns. In some cases, the same microbial taxa and CA classes catalyzed both COS and CO reactions in soil, but in other cases the specificity towards the two substrates differed markedly. CA activity for COS was related to fungal taxa and β-D-CA expression, whereas CA activity for CO was related to algal and bacterial taxa and α-CA expression. This study integrates gas exchange measurements, enzyme activity models, and characterization of soil taxonomic and genetic diversity to build connections between CA activity and the soil microbiome. Importantly, our results identify kinetic parameters to represent soil CA activity during application of COS and COO as carbon cycle tracers.

Citing Articles

Terrestrial photosynthesis inferred from plant carbonyl sulfide uptake.

Lai J, Kooijmans L, Sun W, Lombardozzi D, Campbell J, Gu L Nature. 2024; 634(8035):855-861.

PMID: 39415019 DOI: 10.1038/s41586-024-08050-3.


Soil microbiome characterization and its future directions with biosensing.

DeFord L, Yoon J J Biol Eng. 2024; 18(1):50.

PMID: 39256848 PMC: 11389470. DOI: 10.1186/s13036-024-00444-1.


Root and rhizosphere contribution to the net soil COS exchange.

Kitz F, Wachter H, Spielmann F, Hammerle A, Wohlfahrt G Plant Soil. 2024; 498(1-2):325-339.

PMID: 38665878 PMC: 11039419. DOI: 10.1007/s11104-023-06438-0.


Sulfur assimilation using gaseous carbonyl sulfide by the soil fungus .

Iizuka R, Hattori S, Kosaka Y, Masaki Y, Kawano Y, Ohtsu I Appl Environ Microbiol. 2024; 90(2):e0201523.

PMID: 38299812 PMC: 10880591. DOI: 10.1128/aem.02015-23.


Fungal Carbonyl Sulfide Hydrolase of Trichoderma harzianum Strain THIF08 and Its Relationship with Clade D β-Carbonic Anhydrases.

Masaki Y, Iizuka R, Kato H, Kojima Y, Ogawa T, Yoshida M Microbes Environ. 2021; 36(2).

PMID: 34024869 PMC: 8209446. DOI: 10.1264/jsme2.ME20058.


References
1.
Roy J, Reichel R, Bruggemann N, Hempel S, Rillig M . Succession of arbuscular mycorrhizal fungi along a 52-year agricultural recultivation chronosequence. FEMS Microbiol Ecol. 2017; 93(9). DOI: 10.1093/femsec/fix102. View

2.
Kato H, Saito M, Nagahata Y, Katayama Y . Degradation of ambient carbonyl sulfide by Mycobacterium spp. in soil. Microbiology (Reading). 2008; 154(Pt 1):249-255. DOI: 10.1099/mic.0.2007/011213-0. View

3.
Ogawa T, Noguchi K, Saito M, Nagahata Y, Kato H, Ohtaki A . Carbonyl sulfide hydrolase from Thiobacillus thioparus strain THI115 is one of the β-carbonic anhydrase family enzymes. J Am Chem Soc. 2013; 135(10):3818-25. DOI: 10.1021/ja307735e. View

4.
Nordberg H, Cantor M, Dusheyko S, Hua S, Poliakov A, Shabalov I . The genome portal of the Department of Energy Joint Genome Institute: 2014 updates. Nucleic Acids Res. 2013; 42(Database issue):D26-31. PMC: 3965075. DOI: 10.1093/nar/gkt1069. View

5.
Campbell J, Berry J, Seibt U, Smith S, Montzka S, Launois T . Large historical growth in global terrestrial gross primary production. Nature. 2017; 544(7648):84-87. DOI: 10.1038/nature22030. View