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Energetics Underlying Hemin Extraction from Human Hemoglobin by

Overview
Journal J Biol Chem
Specialty Biochemistry
Date 2018 Mar 16
PMID 29540481
Citations 14
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Abstract

is a leading cause of life-threatening infections in the United States. It actively acquires the essential nutrient iron from human hemoglobin (Hb) using the iron-regulated surface-determinant (Isd) system. This process is initiated when the closely related bacterial IsdB and IsdH receptors bind to Hb and extract its hemin through a conserved tri-domain unit that contains two NEAr iron Transporter (NEAT) domains that are connected by a helical linker domain. Previously, we demonstrated that the tri-domain unit within IsdH (IsdH) triggers hemin release by distorting Hb's F-helix. Here, we report that IsdH promotes hemin release from both the α- and β-subunits. Using a receptor mutant that only binds to the α-subunit of Hb and a stopped-flow transfer assay, we determined the energetics and micro-rate constants of hemin extraction from tetrameric Hb. We found that at 37 °C, the receptor accelerates hemin release from Hb up to 13,400-fold, with an activation enthalpy of 19.5 ± 1.1 kcal/mol. We propose that hemin removal requires the rate-limiting hydrolytic cleavage of the axial HisF8 Nϵ-Fe bond, which, based on molecular dynamics simulations, may be facilitated by receptor-induced bond hydration. Isothermal titration calorimetry experiments revealed that two distinct IsdH·Hb protein·protein interfaces promote hemin release. A high-affinity receptor·Hb(A-helix) interface contributed ∼95% of the total binding standard free energy, enabling much weaker receptor interactions with Hb's F-helix that distort its hemin pocket and cause unfavorable changes in the binding enthalpy. We present a model indicating that receptor-introduced structural distortions and increased solvation underlie the IsdH-mediated hemin extraction mechanism.

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References
1.
Zhu H, Li D, Liu M, Copie V, Lei B . Non-heme-binding domains and segments of the Staphylococcus aureus IsdB protein critically contribute to the kinetics and equilibrium of heme acquisition from methemoglobin. PLoS One. 2014; 9(6):e100744. PMC: 4069089. DOI: 10.1371/journal.pone.0100744. View

2.
Looker D, Cozart P, Durfee S, Hoffman S, Mathews A, Shoemaker S . A human recombinant haemoglobin designed for use as a blood substitute. Nature. 1992; 356(6366):258-60. DOI: 10.1038/356258a0. View

3.
Liong E, Dou Y, Scott E, Olson J, Phillips Jr G . Waterproofing the heme pocket. Role of proximal amino acid side chains in preventing hemin loss from myoglobin. J Biol Chem. 2000; 276(12):9093-100. DOI: 10.1074/jbc.M008593200. View

4.
Dickson C, Jacques D, Clubb R, Guss J, Gell D . The structure of haemoglobin bound to the haemoglobin receptor IsdH from Staphylococcus aureus shows disruption of the native α-globin haem pocket. Acta Crystallogr D Biol Crystallogr. 2015; 71(Pt 6):1295-306. PMC: 8518021. DOI: 10.1107/S1399004715005817. View

5.
Manning J . Preparation of hemoglobin carbamylated at specific NH2-terminal residues. Methods Enzymol. 1981; 76:159-67. DOI: 10.1016/0076-6879(81)76124-x. View