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Rapid Multiplex Small DNA Sequencing on the MinION Nanopore Sequencing Platform

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Journal G3 (Bethesda)
Date 2018 Mar 16
PMID 29540443
Citations 11
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Abstract

Real-time sequencing of short DNA reads has a wide variety of clinical and research applications including screening for mutations, target sequences and aneuploidy. We recently demonstrated that MinION, a nanopore-based DNA sequencing device the size of a USB drive, could be used for short-read DNA sequencing. In this study, an ultra-rapid multiplex library preparation and sequencing method for the MinION is presented and applied to accurately test normal diploid and aneuploidy samples' genomic DNA in under three hours, including library preparation and sequencing. This novel method shows great promise as a clinical diagnostic test for applications requiring rapid short-read DNA sequencing.

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References
1.
Chen S, Li S, Xie W, Li X, Zhang C, Jiang H . Performance comparison between rapid sequencing platforms for ultra-low coverage sequencing strategy. PLoS One. 2014; 9(3):e92192. PMC: 3961333. DOI: 10.1371/journal.pone.0092192. View

2.
Handyside A . PGD and aneuploidy screening for 24 chromosomes by genome-wide SNP analysis: seeing the wood and the trees. Reprod Biomed Online. 2011; 23(6):686-91. DOI: 10.1016/j.rbmo.2011.09.012. View

3.
Jain M, Fiddes I, Miga K, Olsen H, Paten B, Akeson M . Improved data analysis for the MinION nanopore sequencer. Nat Methods. 2015; 12(4):351-6. PMC: 4907500. DOI: 10.1038/nmeth.3290. View

4.
Wang Y, Yang Q, Wang Z . The evolution of nanopore sequencing. Front Genet. 2015; 5:449. PMC: 4285804. DOI: 10.3389/fgene.2014.00449. View

5.
Brezina P, Brezina D, Kearns W . Preimplantation genetic testing. BMJ. 2012; 345:e5908. DOI: 10.1136/bmj.e5908. View