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Triage by Ranking to Support the Curation of Protein Interactions

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Specialty Biology
Date 2017 Dec 9
PMID 29220432
Citations 8
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Abstract

http://candy.hesge.ch/nextA5.

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References
1.
Thomas J, Milward D, Ouzounis C, Pulman S, Carroll M . Automatic extraction of protein interactions from scientific abstracts. Pac Symp Biocomput. 2000; :541-52. DOI: 10.1142/9789814447331_0051. View

2.
Ashburner M, Ball C, Blake J, Botstein D, Butler H, Cherry J . Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet. 2000; 25(1):25-9. PMC: 3037419. DOI: 10.1038/75556. View

3.
Harris T, Antoshechkin I, Bieri T, Blasiar D, Chan J, Chen W . WormBase: a comprehensive resource for nematode research. Nucleic Acids Res. 2009; 38(Database issue):D463-7. PMC: 2808986. DOI: 10.1093/nar/gkp952. View

4.
Gaudet P, Michel P, Zahn-Zabal M, Britan A, Cusin I, Domagalski M . The neXtProt knowledgebase on human proteins: 2017 update. Nucleic Acids Res. 2016; 45(D1):D177-D182. PMC: 5210547. DOI: 10.1093/nar/gkw1062. View

5.
Yoo S, Choi J . Evaluation of Term Ranking Algorithms for Pseudo-Relevance Feedback in MEDLINE Retrieval. Healthc Inform Res. 2011; 17(2):120-30. PMC: 3155169. DOI: 10.4258/hir.2011.17.2.120. View