Zhao D, Ahmed M, Tian M, Li M, Gu Z, Liao Q
Mol Plant Pathol. 2025; 26(3):e70070.
PMID: 40059085
PMC: 11890980.
DOI: 10.1111/mpp.70070.
Trende R, Darling T, Gan T, Wang D, Boon A
Sci Adv. 2025; 11(3):eads2927.
PMID: 39813353
PMC: 11778309.
DOI: 10.1126/sciadv.ads2927.
Bendall E, Dimcheff D, Papalambros L, Fitzsimmons W, Zhu Y, Schmitz J
bioRxiv. 2024; .
PMID: 39605326
PMC: 11601520.
DOI: 10.1101/2024.11.21.624722.
Pauciullo S, Zulian V, La Frazia S, Paci P, Garbuglia A
Microorganisms. 2024; 12(11).
PMID: 39597581
PMC: 11596118.
DOI: 10.3390/microorganisms12112191.
Li C, Culhane M, Schroeder D, Cheeran M, Galina Pantoja L, Jansen M
J Virol. 2024; 98(12):e0124524.
PMID: 39530665
PMC: 11651001.
DOI: 10.1128/jvi.01245-24.
Regional Variability of Chestnut () Tolerance Toward Blight Disease.
Jezic M, Nuskern L, Peranic K, Popovic M, Curkovic-Perica M, Mendas O
Plants (Basel). 2024; 13(21).
PMID: 39519976
PMC: 11548496.
DOI: 10.3390/plants13213060.
Rapid intra-host diversification and evolution of SARS-CoV-2 in advanced HIV infection.
Ko S, Radecki P, Belinky F, Bhiman J, Meiring S, Kleynhans J
Nat Commun. 2024; 15(1):7240.
PMID: 39174553
PMC: 11341811.
DOI: 10.1038/s41467-024-51539-8.
The Characteristic of HBV Quasispecies Is Related to Occult HBV Infection of Infants Born to Highly Viremic Mothers.
Li Y, Song Y, Xiao Y, Wang T, Li L, Liu M
Viruses. 2024; 16(7).
PMID: 39066265
PMC: 11281566.
DOI: 10.3390/v16071104.
Barcoded SARS-CoV-2 viruses define the impact of time and route of transmission on the transmission bottleneck in a Syrian hamster model.
Trende R, Darling T, Gan T, Wang D, Boon A
bioRxiv. 2024; .
PMID: 38915710
PMC: 11195048.
DOI: 10.1101/2024.06.08.597602.
Influenza A genomic diversity during human infections underscores the strength of genetic drift and the existence of tight transmission bottlenecks.
Martin M, Berg N, Koelle K
Virus Evol. 2024; 10(1):veae042.
PMID: 38883977
PMC: 11179161.
DOI: 10.1093/ve/veae042.
Phylodynamic and Evolution of the Hemagglutinin (HA) and Neuraminidase (NA) Genes of Influenza A(H1N1) pdm09 Viruses Circulating in the 2009 and 2023 Seasons in Italy.
Scarpa F, Sernicola L, Farcomeni S, Ciccozzi A, Sanna D, Casu M
Pathogens. 2024; 13(4).
PMID: 38668289
PMC: 11054071.
DOI: 10.3390/pathogens13040334.
Assessing the emergence time of SARS-CoV-2 zoonotic spillover.
Samson S, Lord E, Makarenkov V
PLoS One. 2024; 19(4):e0301195.
PMID: 38574109
PMC: 10994396.
DOI: 10.1371/journal.pone.0301195.
Sequence signatures within the genome of SARS-CoV-2 can be used to predict host source.
Rudar J, Kruczkiewicz P, Vernygora O, Golding G, Hajibabaei M, Lung O
Microbiol Spectr. 2024; 12(4):e0358423.
PMID: 38436242
PMC: 10986507.
DOI: 10.1128/spectrum.03584-23.
Genetic Diversity of Grapevine Virus A in Three Australian Vineyards Using Amplicon High Throughput Sequencing (Amplicon-HTS).
Wu Q, Kinoti W, Habili N, Tyerman S, Rinaldo A, Constable F
Viruses. 2024; 16(1).
PMID: 38257742
PMC: 10819895.
DOI: 10.3390/v16010042.
Transmission Bottleneck Size Estimation from De Novo Viral Genetic Variation.
Shi Y, Harris J, Martin M, Koelle K
Mol Biol Evol. 2023; 41(1).
PMID: 38158742
PMC: 10798134.
DOI: 10.1093/molbev/msad286.
Understanding the divergent evolution and epidemiology of H3N8 influenza viruses in dogs and horses.
Wasik B, Rothschild E, Voorhees I, Reedy S, Murcia P, Pusterla N
Virus Evol. 2023; 9(2):vead052.
PMID: 37692894
PMC: 10484056.
DOI: 10.1093/ve/vead052.
Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data.
Roder A, Johnson K, Knoll M, Khalfan M, Wang B, Schultz-Cherry S
mBio. 2023; 14(4):e0104623.
PMID: 37389439
PMC: 10470513.
DOI: 10.1128/mbio.01046-23.
Viral intra-host evolutionary dynamics revealed via serial passage of Japanese encephalitis virus .
Sun B, Ni M, Liu H, Liu D
Virus Evol. 2023; 9(1):veac103.
PMID: 37205166
PMC: 10185921.
DOI: 10.1093/ve/veac103.
Avian H7N9 influenza viruses are evolutionarily constrained by stochastic processes during replication and transmission in mammals.
Braun K, Haddock Iii L, Crooks C, Barry G, Lalli J, Neumann G
Virus Evol. 2023; 9(1):vead004.
PMID: 36814938
PMC: 9939568.
DOI: 10.1093/ve/vead004.
Rapid transmission and tight bottlenecks constrain the evolution of highly transmissible SARS-CoV-2 variants.
Bendall E, Callear A, Getz A, Goforth K, Edwards D, Monto A
Nat Commun. 2023; 14(1):272.
PMID: 36650162
PMC: 9844183.
DOI: 10.1038/s41467-023-36001-5.