A High-fidelity Method for Genomic Sequencing of Single Somatic Cells Reveals a Very High Mutational Burden
Overview
Affiliations
Postzygotic mutations in somatic cells lead to genome mosaicism and can be the cause of cancer, possibly other human diseases and aging. Somatic mutations are difficult to detect in bulk tissue samples. Here, we review the available assays for measuring somatic mutations, with a focus on recent single-cell, whole genome sequencing methods. Impact statement Somatic mutations cause cancer, possibly other diseases and aging. Yet, very little is known about the frequency of such mutations in vivo, their distribution across the genome, and their possible functional consequences other than cancer. Even in cancer, we do not know the heterogeneity of mutations within a tumor and if seemingly normal cells in its surroundings already have elevated mutation frequencies. Here, we review a new, whole genome amplification system that allows accurate quantification and characterization of single-cell mutational landscapes in human cells and tissues in relation to disease.
Walsh K, Raghavachari N, Kerr C, Bick A, Cummings S, Druley T Front Aging. 2022; 3:841796.
PMID: 35821803 PMC: 9261374. DOI: 10.3389/fragi.2022.841796.
The Mutagenic Impact of Environmental Exposures in Human Cells and Cancer: Imprints Through Time.
Rosendahl Huber A, Van Hoeck A, van Boxtel R Front Genet. 2021; 12:760039.
PMID: 34745228 PMC: 8565797. DOI: 10.3389/fgene.2021.760039.
Bogenschutz E, Fox Z, Farrell A, Wynn J, Moore B, Yu L HGG Adv. 2020; 1(1).
PMID: 33263113 PMC: 7703690. DOI: 10.1016/j.xhgg.2020.100008.
Yang X, Yang C, Zheng X, Xiong L, Tao Y, Wang M Genomics Proteomics Bioinformatics. 2020; 18(2):140-149.
PMID: 32911083 PMC: 7646124. DOI: 10.1016/j.gpb.2020.05.002.