Achterberg T, de Jong A
NAR Genom Bioinform. 2025; 7(1):lqae188.
PMID: 39781509
PMC: 11704786.
DOI: 10.1093/nargab/lqae188.
Han S, Liu J, Li M, Zhang Y, Duan X, Zhang Y
mSystems. 2022; 7(5):e0043422.
PMID: 36106744
PMC: 9600465.
DOI: 10.1128/msystems.00434-22.
Huang Y, Wurihan W, Lu B, Zou Y, Wang Y, Weldon K
Front Microbiol. 2022; 12:812448.
PMID: 35046926
PMC: 8762339.
DOI: 10.3389/fmicb.2021.812448.
Burgos H, Burgos E, Steinberger A, Suen G, Mandel M
mSystems. 2020; 5(6).
PMID: 33323415
PMC: 7771539.
DOI: 10.1128/mSystems.00846-20.
Mahmud A, Nilsson K, Fahlgren A, Navais R, Choudhury R, Avican K
mSystems. 2020; 5(6).
PMID: 33172972
PMC: 7657599.
DOI: 10.1128/mSystems.01006-20.
Response regulator VemR regulates the transcription of flagellar rod gene flgG by interacting with σ factor RpoN2 in Xanthomonas citri ssp. citri.
Wu W, Zhao Z, Luo X, Fan X, Zhuo T, Hu X
Mol Plant Pathol. 2018; 20(3):372-381.
PMID: 30353625
PMC: 6637908.
DOI: 10.1111/mpp.12762.
Pyrimidine Biosynthesis Regulates the Small-Colony Variant and Mucoidy in Pseudomonas aeruginosa through Sigma Factor Competition.
Al Ahmar R, Kirby B, Yu H
J Bacteriol. 2018; 201(1).
PMID: 30322853
PMC: 6287457.
DOI: 10.1128/JB.00575-18.
RpoN-Dependent Direct Regulation of Quorum Sensing and the Type VI Secretion System in Pseudomonas aeruginosa PAO1.
Shao X, Zhang X, Zhang Y, Zhu M, Yang P, Yuan J
J Bacteriol. 2018; 200(16).
PMID: 29760208
PMC: 6060356.
DOI: 10.1128/JB.00205-18.
Regulation of Pathogenesis by Alternative Sigma Factor N.
Riordan J, Mitra A
EcoSal Plus. 2017; 7(2).
PMID: 28635589
PMC: 11575691.
DOI: 10.1128/ecosalplus.ESP-0016-2016.
Survival guide: Escherichia coli in the stationary phase.
Pletnev P, Osterman I, Sergiev P, Bogdanov A, Dontsova O
Acta Naturae. 2016; 7(4):22-33.
PMID: 26798489
PMC: 4717247.
Genome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic Binding.
Bonocora R, Smith C, Lapierre P, Wade J
PLoS Genet. 2015; 11(10):e1005552.
PMID: 26425847
PMC: 4591121.
DOI: 10.1371/journal.pgen.1005552.
Transcription factor-based biosensors enlightened by the analyte.
Fernandez-Lopez R, Ruiz R, de la Cruz F, Moncalian G
Front Microbiol. 2015; 6:648.
PMID: 26191047
PMC: 4486848.
DOI: 10.3389/fmicb.2015.00648.
σ54-Dependent Response to Nitrogen Limitation and Virulence in Burkholderia cenocepacia Strain H111.
Lardi M, Aguilar C, Pedrioli A, Omasits U, Suppiger A, Carcamo-Oyarce G
Appl Environ Microbiol. 2015; 81(12):4077-89.
PMID: 25841012
PMC: 4524130.
DOI: 10.1128/AEM.00694-15.
Genome degeneration and adaptation in a nascent stage of symbiosis.
Oakeson K, Gil R, Clayton A, Dunn D, von Niederhausern A, Hamil C
Genome Biol Evol. 2014; 6(1):76-93.
PMID: 24407854
PMC: 3914690.
DOI: 10.1093/gbe/evt210.
Nitrogen assimilation in Escherichia coli: putting molecular data into a systems perspective.
van Heeswijk W, Westerhoff H, Boogerd F
Microbiol Mol Biol Rev. 2013; 77(4):628-95.
PMID: 24296575
PMC: 3973380.
DOI: 10.1128/MMBR.00025-13.
Structure, function, and tethering of DNA-binding domains in σ⁵⁴ transcriptional activators.
Vidangos N, Maris A, Young A, Hong E, Pelton J, Batchelor J
Biopolymers. 2013; 99(12):1082-96.
PMID: 23818155
PMC: 3932985.
DOI: 10.1002/bip.22333.
Characterization of the RpoN regulon reveals differential regulation of T6SS and new flagellar operons in Vibrio cholerae O37 strain V52.
Dong T, Mekalanos J
Nucleic Acids Res. 2012; 40(16):7766-75.
PMID: 22723378
PMC: 3439928.
DOI: 10.1093/nar/gks567.
A NAC for regulating metabolism: the nitrogen assimilation control protein (NAC) from Klebsiella pneumoniae.
Bender R
J Bacteriol. 2010; 192(19):4801-11.
PMID: 20675498
PMC: 2944532.
DOI: 10.1128/JB.00266-10.
In vivo assembly and single-molecule characterization of the transcription machinery from Shewanella oneidensis MR-1.
Gassman N, Ho S, Korlann Y, Chiang J, Wu Y, Perry L
Protein Expr Purif. 2008; 65(1):66-76.
PMID: 19111618
PMC: 3084661.
DOI: 10.1016/j.pep.2008.11.013.
Using two-component systems and other bacterial regulatory factors for the fabrication of synthetic genetic devices.
Ninfa A, Selinsky S, Perry N, Atkins S, Song Q, Mayo A
Methods Enzymol. 2007; 422:488-512.
PMID: 17628156
PMC: 3052260.
DOI: 10.1016/S0076-6879(06)22025-1.