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Genomic Analyses Reveal the Influence of Geographic Origin, Migration, and Hybridization on Modern Dog Breed Development

Overview
Journal Cell Rep
Publisher Cell Press
Date 2017 Apr 27
PMID 28445722
Citations 189
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Abstract

There are nearly 400 modern domestic dog breeds with a unique histories and genetic profiles. To track the genetic signatures of breed development, we have assembled the most diverse dataset of dog breeds, reflecting their extensive phenotypic variation and heritage. Combining genetic distance, migration, and genome-wide haplotype sharing analyses, we uncover geographic patterns of development and independent origins of common traits. Our analyses reveal the hybrid history of breeds and elucidate the effects of immigration, revealing for the first time a suggestion of New World dog within some modern breeds. Finally, we used cladistics and haplotype sharing to show that some common traits have arisen more than once in the history of the dog. These analyses characterize the complexities of breed development, resolving longstanding questions regarding individual breed origination, the effect of migration on geographically distinct breeds, and, by inference, transfer of trait and disease alleles among dog breeds.

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References
1.
Vaysse A, Ratnakumar A, Derrien T, Axelsson E, Pielberg G, Sigurdsson S . Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping. PLoS Genet. 2011; 7(10):e1002316. PMC: 3192833. DOI: 10.1371/journal.pgen.1002316. View

2.
Lachance J, Tishkoff S . SNP ascertainment bias in population genetic analyses: why it is important, and how to correct it. Bioessays. 2013; 35(9):780-6. PMC: 3849385. DOI: 10.1002/bies.201300014. View

3.
Parker H, Kukekova A, Akey D, Goldstein O, Kirkness E, Baysac K . Breed relationships facilitate fine-mapping studies: a 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds. Genome Res. 2007; 17(11):1562-71. PMC: 2045139. DOI: 10.1101/gr.6772807. View

4.
Bell G, KARAM J, Rutter W . Polymorphic DNA region adjacent to the 5' end of the human insulin gene. Proc Natl Acad Sci U S A. 1981; 78(9):5759-63. PMC: 348853. DOI: 10.1073/pnas.78.9.5759. View

5.
Leonard J, Wayne R, Wheeler J, Valadez R, Guillen S, Vila C . Ancient DNA evidence for Old World origin of New World dogs. Science. 2002; 298(5598):1613-6. DOI: 10.1126/science.1076980. View