Complete Genome and Methylome Sequences of Subsp. Serovars Typhimurium, Saintpaul, and Stanleyville from the SARA/SARB Collection

Overview

Journal Genome Announc

Publisher American Society for Microbiology

Date 2017 Mar 18

PMID 28302778

Citations 1

Authors

Kuan Yao

Richard J Roberts

Marc W Allard

Maria Hoffmann

Affiliations

Soon will be listed here.

Abstract

In this announcement, we report the complete genome and methylome sequences of three strains from the SARA and SARB collection: subsp. serovar Typhimurium (SARA13), subsp. serovar Saintpaul (SARA26), and subsp. serovar Stanleyville (SARB61).

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References

Timme R, Pettengill J, Allard M, Strain E, Barrangou R, Wehnes C . Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters. Genome Biol Evol. 2013; 5(11):2109-23. PMC: 3845640. DOI: 10.1093/gbe/evt159. View

Zhou Y, Liang Y, Lynch K, Dennis J, Wishart D . PHAST: a fast phage search tool. Nucleic Acids Res. 2011; 39(Web Server issue):W347-52. PMC: 3125810. DOI: 10.1093/nar/gkr485. View

Boyd E, Wang F, Beltran P, Plock S, Nelson K, Selander R . Salmonella reference collection B (SARB): strains of 37 serovars of subspecies I. J Gen Microbiol. 1993; 139 Pt 6:1125-32. DOI: 10.1099/00221287-139-6-1125. View

Chin C, Alexander D, Marks P, Klammer A, Drake J, Heiner C . Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Methods. 2013; 10(6):563-9. DOI: 10.1038/nmeth.2474. View

Yao K, Muruvanda T, Roberts R, Payne J, Allard M, Hoffmann M . Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovar Panama (ATCC 7378) and Salmonella enterica subsp. enterica Serovar Sloterdijk (ATCC 15791). Genome Announc. 2016; 4(2). PMC: 4796128. DOI: 10.1128/genomeA.00133-16. View

Achtman M, Hale J, Murphy R, Boyd E, Porwollik S . Population structures in the SARA and SARB reference collections of Salmonella enterica according to MLST, MLEE and microarray hybridization. Infect Genet Evol. 2013; 16:314-25. DOI: 10.1016/j.meegid.2013.03.003. View

Afema J, Byarugaba D, Shah D, Atukwase E, Nambi M, Sischo W . Potential Sources and Transmission of Salmonella and Antimicrobial Resistance in Kampala, Uganda. PLoS One. 2016; 11(3):e0152130. PMC: 4801205. DOI: 10.1371/journal.pone.0152130. View

Roberts R, Vincze T, Posfai J, Macelis D . REBASE--a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res. 2014; 43(Database issue):D298-9. PMC: 4383893. DOI: 10.1093/nar/gku1046. View

Hoffmann M, Payne J, Roberts R, Allard M, Brown E, Pettengill J . Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Agona 460004 2-1, Associated with a Multistate Outbreak in the United States. Genome Announc. 2015; 3(4). PMC: 4490842. DOI: 10.1128/genomeA.00690-15. View

10.

Flusberg B, Webster D, Lee J, Travers K, Olivares E, Clark T . Direct detection of DNA methylation during single-molecule, real-time sequencing. Nat Methods. 2010; 7(6):461-5. PMC: 2879396. DOI: 10.1038/nmeth.1459. View

11.

Ngandjio A, Tchendjou P, Ndombo P, Kamga H, Fonkoua M . Emergence of multi-drug resistant Salmonella enterica serotype Stanleyville infections among children in Yaounde, Cameroon. J Trop Pediatr. 2011; 58(2):161-3. DOI: 10.1093/tropej/fmr054. View

12.

Beltran P, Plock S, Smith N, Whittam T, Old D, Selander R . Reference collection of strains of the Salmonella typhimurium complex from natural populations. J Gen Microbiol. 1991; 137(3):601-6. DOI: 10.1099/00221287-137-3-601. View

13.

Moreno Switt A, Soyer Y, Warnick L, Wiedmann M . Emergence, distribution, and molecular and phenotypic characteristics of Salmonella enterica serotype 4,5,12:i:-. Foodborne Pathog Dis. 2009; 6(4):407-15. PMC: 3186709. DOI: 10.1089/fpd.2008.0213. View