Improved Surfaceome Coverage with a Label-free Nonaffinity-purified Workflow

Overview

Journal Proteomics

Date 2017 Jan 25

PMID 28116781

Citations 4

Authors

Tina Glisovic-Aplenc

Saar Gill

Lynn A Spruce

Ian R Smith

Hossein Fazelinia

Olga Shestova

Hua Ding

Sarah K Tasian

Richard Aplenc

Steven H Seeholzer

Affiliations

Soon will be listed here.

Abstract

The proteins of the cellular plasma membrane (PM) perform important functions relating to homeostasis and intercellular communication. Due to its overall low cellular abundance, amphipathic character, and low membrane-to-cytoplasm ratio, the PM proteome has been challenging to isolate and characterize, and is poorly represented in standard LC-MS/MS analyses. In this study, we employ sucrose gradient ultracentrifugation for the enrichment of the PM proteome, without chemical labeling and affinity purification, together with GeLCMS and use subsequent bioinformatics tools to select proteins associated with the PM/cell surface, herein referred to as the surfaceome. Using this methodology, we identify over 1900 cell surface associated proteins in a human acute myeloid leukemia cell line. These surface proteins comprise almost 50% of all detected cellular proteins, a number that substantially exceeds the depth of coverage in previously published studies describing the leukemia surfaceome.

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