» Articles » PMID: 26743083

Computational 'microscopy' of Cellular Membranes

Overview
Journal J Cell Sci
Specialty Cell Biology
Date 2016 Jan 9
PMID 26743083
Citations 57
Authors
Affiliations
Soon will be listed here.
Abstract

Computational 'microscopy' refers to the use of computational resources to simulate the dynamics of a molecular system. Tuned to cell membranes, this computational 'microscopy' technique is able to capture the interplay between lipids and proteins at a spatio-temporal resolution that is unmatched by other methods. Recent advances allow us to zoom out from individual atoms and molecules to supramolecular complexes and subcellular compartments that contain tens of millions of particles, and to capture the complexity of the crowded environment of real cell membranes. This Commentary gives an overview of the main concepts of computational 'microscopy' and describes the state-of-the-art methods used to model cell membrane processes. We illustrate the power of computational modelling approaches by providing a few in-depth examples of large-scale simulations that move up from molecular descriptions into the subcellular arena. We end with an outlook towards modelling a complete cell in silico.

Citing Articles

Biomembrane structure at the molecular level and its application in precision medicine.

Wang Z, Tian Z, Gao J, Wang H Biophys Rev (Melville). 2025; 6(1):011306.

PMID: 39980736 PMC: 11839234. DOI: 10.1063/5.0213964.


The Role of Cholesterol in M2 Clustering and Viral Budding Explained.

Kolokouris D, Kalenderoglou I, Duncan A, Corey R, Sansom M, Kolocouris A J Chem Theory Comput. 2024; 21(2):912-932.

PMID: 39494590 PMC: 11780748. DOI: 10.1021/acs.jctc.4c01026.


Electrophysical cardiac remodeling at the molecular level: Insights into ryanodine receptor activation and calcium-induced calcium release from a stochastic explicit-particle model.

Hirakis S, Bartol T, Autin L, Amaro R, Sejnowski T Biophys J. 2024; 123(21):3812-3831.

PMID: 39369273 PMC: 11560313. DOI: 10.1016/j.bpj.2024.09.029.


Proposed molecular mechanism of non-competitive inhibition using molecular dynamics simulations between α-glucosidase enzyme and mangostin compound as antidiabetic.

Maulana A, Maksum I, Sriwidodo S, Rukayadi Y J Mol Model. 2024; 30(5):136.

PMID: 38634946 DOI: 10.1007/s00894-024-05934-z.


Eukaryotic Cell Membranes: Structure, Composition, Research Methods and Computational Modelling.

Zhukov A, Popov V Int J Mol Sci. 2023; 24(13).

PMID: 37446404 PMC: 10342339. DOI: 10.3390/ijms241311226.