Helgi I Ingolfsson
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Explore the profile of Helgi I Ingolfsson including associated specialties, affiliations and a list of published articles.
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61
Citations
2921
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Recent Articles
1.
Georgouli K, Stephany R, Tempkin J, Santiago C, Aydin F, Heimann M, et al.
J Chem Theory Comput
. 2024 Oct;
20(20):8795-8806.
PMID: 39388723
Resolving the intricate details of biological phenomena at the molecular level is fundamentally limited by both length- and time scales that can be probed experimentally. Molecular dynamics (MD) simulations at...
2.
Bennett W, Bernardi A, Ozturk T, Ingolfsson H, Fox S, Sun D, et al.
Molecules
. 2024 Aug;
29(15).
PMID: 39124960
Soft condensed matter is challenging to study due to the vast time and length scales that are necessary to accurately represent complex systems and capture their underlying physics. Multiscale simulations...
3.
Ozturk T, Konig M, Carpenter T, Pedersen K, Wassenaar T, Ingolfsson H, et al.
Methods Enzymol
. 2024 Jul;
701:237-285.
PMID: 39025573
The Martini model is a popular force field for coarse-grained simulations. Membranes have always been at the center of its development, with the latest version, Martini 3, showing great promise...
4.
Shrestha R, Carpenter T, Van Q, Agamasu C, Tonelli M, Aydin F, et al.
Commun Biol
. 2024 Apr;
7(1):445.
PMID: 38605143
No abstract available.
5.
Shrestha R, Carpenter T, Van Q, Agamasu C, Tonelli M, Aydin F, et al.
Commun Biol
. 2024 Feb;
7(1):242.
PMID: 38418613
The oncogene RAS, extensively studied for decades, presents persistent gaps in understanding, hindering the development of effective therapeutic strategies due to a lack of precise details on how RAS initiates...
6.
Liu X, Duan S, Jin Y, Walker E, Tsao M, Jang J, et al.
ACS Chem Neurosci
. 2023 Dec;
14(24):4395-4408.
PMID: 38050862
Abnormal cytosolic aggregation of TAR DNA-binding protein of 43 kDa (TDP-43) is observed in multiple diseases, including amyotrophic lateral sclerosis (ALS), frontotemporal lobar degeneration, and Alzheimer's disease. Previous studies have...
7.
Ingolfsson H, Rizuan A, Liu X, Mohanty P, Souza P, Marrink S, et al.
Biophys J
. 2023 Oct;
122(22):4370-4381.
PMID: 37853696
The RNA-binding protein TDP-43 is associated with mRNA processing and transport from the nucleus to the cytoplasm. TDP-43 localizes in the nucleus as well as accumulating in cytoplasmic condensates such...
8.
Borges-Araujo L, Borges-Araujo A, Ozturk T, Ramirez-Echemendia D, Fabian B, Carpenter T, et al.
J Chem Theory Comput
. 2023 Oct;
19(20):7387-7404.
PMID: 37796943
Cholesterol plays a crucial role in biomembranes by regulating various properties, such as fluidity, rigidity, permeability, and organization of lipid bilayers. The latest version of the Martini model, Martini 3,...
9.
Tibbs G, Uprety R, Warren J, Beyer N, Joyce R, Ferrer M, et al.
Br J Anaesth
. 2023 Aug;
131(4):745-763.
PMID: 37567808
Background: Neuropathic pain impairs quality of life, is widely prevalent, and incurs significant costs. Current pharmacological therapies have poor/no efficacy and significant adverse effects; safe and effective alternatives are needed....
10.
Ingolfsson H, Bhatia H, Aydin F, Oppelstrup T, Lopez C, Stanton L, et al.
J Chem Theory Comput
. 2023 Apr;
19(9):2658-2675.
PMID: 37075065
Interdependence across time and length scales is common in biology, where atomic interactions can impact larger-scale phenomenon. Such dependence is especially true for a well-known cancer signaling pathway, where the...