» Articles » PMID: 26400738

Splicing Diversity Revealed by Reduced Spliceosomes in C. Merolae and Other Organisms

Overview
Journal RNA Biol
Specialty Molecular Biology
Date 2015 Sep 25
PMID 26400738
Citations 14
Authors
Affiliations
Soon will be listed here.
Abstract

Pre-mRNA splicing has been considered one of the hallmarks of eukaryotes, yet its diversity is astonishing: the number of substrate introns for splicing ranges from hundreds of thousands in humans to a mere handful in certain parasites. The catalytic machinery that carries out splicing, the spliceosome, is similarly diverse, with over 300 associated proteins in humans to a few tens in other organisms. In this Point of View, we discuss recent work characterizing the reduced spliceosome of the acidophilic red alga Cyanidioschyzon merolae, which further highlights the diversity of splicing in that it does not possess the U1 snRNP that is characteristically responsible for 5' splice site recognition. Comparisons to other organisms with reduced spliceosomes, such as microsporidia, trypanosomes, and Giardia, help to identify the most highly conserved splicing factors, pointing to the essential core of this complex machine. These observations argue for increased exploration of important biochemical processes through study of a wider ranger of organisms.

Citing Articles

Spliceosomal introns in the diplomonad parasite revisited.

Seabolt M, Roellig D, Konstantinidis K Microb Genom. 2023; 9(11).

PMID: 37934076 PMC: 10711314. DOI: 10.1099/mgen.0.001117.


Spliceosome assembly and regulation: insights from analysis of highly reduced spliceosomes.

Black C, Whelan T, Garside E, MacMillan A, Fast N, Rader S RNA. 2023; 29(5):531-550.

PMID: 36737103 PMC: 10158995. DOI: 10.1261/rna.079273.122.


The spread of the first introns in proto-eukaryotic paralogs.

Vosseberg J, Schinkel M, Gremmen S, Snel B Commun Biol. 2022; 5(1):476.

PMID: 35589959 PMC: 9120149. DOI: 10.1038/s42003-022-03426-5.


The Unicellular Red Alga Cyanidioschyzon merolae-The Simplest Model of a Photosynthetic Eukaryote.

Miyagishima S, Tanaka K Plant Cell Physiol. 2021; 62(6):926-941.

PMID: 33836072 PMC: 8504449. DOI: 10.1093/pcp/pcab052.


Genome plasticity in Paramecium bursaria revealed by population genomics.

Cheng Y, Liu C, Yu Y, Jhou Y, Fujishima M, Tsai I BMC Biol. 2020; 18(1):180.

PMID: 33250052 PMC: 7702705. DOI: 10.1186/s12915-020-00912-2.


References
1.
Stark M, Dunn E, Dunn W, Grisdale C, Daniele A, Halstead M . Dramatically reduced spliceosome in Cyanidioschyzon merolae. Proc Natl Acad Sci U S A. 2015; 112(11):E1191-200. PMC: 4371933. DOI: 10.1073/pnas.1416879112. View

2.
Gray M, Lukes J, Archibald J, Keeling P, Doolittle W . Cell biology. Irremediable complexity?. Science. 2010; 330(6006):920-1. DOI: 10.1126/science.1198594. View

3.
Hudson A, Moore A, Elniski D, Joseph J, Yee J, Russell A . Evolutionarily divergent spliceosomal snRNAs and a conserved non-coding RNA processing motif in Giardia lamblia. Nucleic Acids Res. 2012; 40(21):10995-1008. PMC: 3510501. DOI: 10.1093/nar/gks887. View

4.
Lopez M, Alm Rosenblad M, Samuelsson T . Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components. Nucleic Acids Res. 2008; 36(9):3001-10. PMC: 2396436. DOI: 10.1093/nar/gkn142. View

5.
Djikeng A, Ferreira L, DAngelo M, Dolezal P, Lamb T, Murta S . Characterization of a candidate Trypanosoma brucei U1 small nuclear RNA gene. Mol Biochem Parasitol. 2001; 113(1):109-15. DOI: 10.1016/s0166-6851(00)00384-4. View